HHsearch alignment for GI: 254780780 and conserved domain: pfam11969
>pfam11969 DcpS_C Scavenger mRNA decapping enzyme C-term binding. This family consists of several scavenger mRNA decapping enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger pyrophosphatase that hydrolyses the residual cap structure following 3' to 5' decay of an mRNA. The association of DcpS with 3' to 5' exonuclease exosome components suggests that these two activities are linked and there is a coupled exonucleolytic decay-dependent decapping pathway. The C-terminal domain contains a histidine triad (HIT) sequence with three histidines separated by hydrophobic residues. The central histidine within the DcpS HIT motif is critical for decapping activity and defines the HIT motif as a new mRNA decapping domain, making DcpS the first member of the HIT family of proteins with a defined biological function.
Probab=99.96 E-value=7.2e-29 Score=201.29 Aligned_cols=109 Identities=30% Similarity=0.410 Sum_probs=96.9
Q ss_pred CCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 76545444688873178778909999417888982299994155421344027888989999997304455313526669
Q gi|254780780|r 12 QNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQ 91 (155)
Q Consensus 12 ~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~n 91 (155)
T Consensus 1 ~ciFc~I~~~~~p~~ivyedd~~vaf~D~~P~~~gH~LVIPk~h~~~~~dl~~~~~~~l~~~~~~~~~~~~~-~~~~~~~ 79 (113)
T pfam11969 1 KWVFCIIINGEEPERIVYEDDGFVAFKDIKPKAPLHLLVIPKKHIKSLRDLTKEHLPLLGHMREVAKKIAKE-KYNEGYR 79 (113)
T ss_pred CCCCCEEECCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCC
T ss_conf 946336536897778899799999986899899975999999740443548987999999999999999998-6897786
Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 998257566863101069999523799765
Q gi|254780780|r 92 ILQFNGHAAGQTVPHLHFHVIPCKNGDNAS 121 (155)
Q Consensus 92 i~~~~g~~~gq~V~HlH~HiiPR~~~d~~~ 121 (155)
T Consensus 80 ~~~n~G~~a~qsv~HlH~HvI~~~~~~~~~ 109 (113)
T pfam11969 80 DVLRLGFHYGPSVYHLHLHVIAPDFEPGLG 109 (113)
T ss_pred EEEECCCCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 699726443636788899984677888777