Query gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 155
No_of_seqs 113 out of 2377
Neff 7.8
Searched_HMMs 13730
Date Wed Jun 1 06:29:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780780.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y23a_ d.13.1.1 (A:) Hit {Bac 100.0 6.6E-41 4.2E-45 273.5 12.6 138 11-148 1-138 (139)
2 d1emsa1 d.13.1.1 (A:281-440) N 100.0 1.7E-36 1.2E-40 246.0 11.7 138 11-148 14-160 (160)
3 d2oika1 d.13.1.1 (A:6-144) His 100.0 5E-33 3.7E-37 224.4 12.6 136 9-153 2-139 (139)
4 d1kpfa_ d.13.1.1 (A:) Protein 100.0 2.2E-33 1.6E-37 226.6 10.4 105 12-116 1-105 (111)
5 d1xqua_ d.13.1.1 (A:) Putative 100.0 8.4E-33 6.1E-37 223.0 11.3 108 11-118 2-110 (113)
6 d1fita_ d.13.1.1 (A:) FHIT (fr 100.0 9.4E-32 6.8E-36 216.4 11.9 126 24-149 11-146 (146)
7 d1z84a2 d.13.1.2 (A:196-351) G 99.9 4.6E-27 3.3E-31 187.2 9.7 131 10-146 18-152 (156)
8 d1guqa2 d.13.1.2 (A:178-348) G 99.9 5.2E-27 3.8E-31 186.9 7.1 136 10-146 16-160 (171)
9 d1vlra1 d.13.1.3 (A:146-337) m 99.2 1.6E-10 1.2E-14 84.0 10.9 102 12-117 28-140 (192)
10 d1z84a1 d.13.1.2 (A:23-195) Ga 98.0 3E-05 2.2E-09 51.1 10.2 106 7-113 35-169 (173)
11 d1guqa1 d.13.1.2 (A:2-177) Gal 97.9 4.8E-05 3.5E-09 49.8 9.3 106 5-113 43-170 (176)
12 d2pofa1 d.13.1.4 (A:31-250) CD 97.4 0.00015 1.1E-08 46.7 6.0 99 10-112 9-114 (220)
13 d1mg4a_ d.15.11.1 (A:) Doublec 60.5 4.5 0.00033 18.8 3.7 55 33-91 5-62 (101)
14 d1ml4a1 c.78.1.1 (A:2-151) Asp 22.4 23 0.0017 14.4 3.4 33 52-84 3-35 (150)
15 d1v9ka_ d.265.1.3 (A:) Ribosom 20.2 26 0.0019 14.1 2.1 11 27-37 3-13 (227)
No 1
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Probab=100.00 E-value=6.6e-41 Score=273.52 Aligned_cols=138 Identities=33% Similarity=0.487 Sum_probs=127.4
Q ss_pred CCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 97654544468887317877890999941788898229999415542134402788898999999730445531352666
Q gi|254780780|r 11 NQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGI 90 (155)
Q Consensus 11 d~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~ 90 (155)
|+|+||+|++||+|+.+|||||.++||+|++|.+|||+||+||+|+.++.+|+++++.+++.+++++++++++.++++|+
T Consensus 1 e~CiFC~I~~~e~p~~~i~ede~~~af~d~~P~~~GH~LViPk~H~~~~~dL~~~~~~~l~~~~~~~~~~l~~~~~~~g~ 80 (139)
T d1y23a_ 1 ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGL 80 (139)
T ss_dssp CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEE
T ss_pred CCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 91803755268987567987797899866888998579999721324521110478888999999988887640156774
Q ss_pred EEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9998257566863101069999523799765345577666889899999999999999
Q gi|254780780|r 91 QILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIENFAKLEINAQKIRKEL 148 (155)
Q Consensus 91 ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~~~~~~~~~~~~~l~~~a~~lr~~l 148 (155)
|+++|+|+.+||+|||+|+|||||++++......++......+.+++++++++||++|
T Consensus 81 ~i~~n~g~~agq~v~H~H~HviPR~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~L 138 (139)
T d1y23a_ 81 NTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADDYKPEDLQNISSSIAKRL 138 (139)
T ss_dssp EEEEEESGGGTCCSSSCCEEEEEECSTTCSEEEEECCCGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 8986777430574478999997243289886535666778789999999999999960
No 2
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=100.00 E-value=1.7e-36 Score=246.05 Aligned_cols=138 Identities=22% Similarity=0.351 Sum_probs=122.5
Q ss_pred CCCHHHHHHCCCCCCC-EEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9765454446888731-787789099994178889822999941554213440278889899999973044553135266
Q gi|254780780|r 11 NQNIFIKIIRNETNAC-RVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADG 89 (155)
Q Consensus 11 d~CiFC~Ii~ge~p~~-~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~ 89 (155)
-+|.||+|.++|+|+. +||||+.++||+|++|.+|||+|||||+|+.++.||+++++.+++.+++++++++++.++++|
T Consensus 14 ~~~~~~~~~~~eiP~~~ii~ede~~~af~Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g 93 (160)
T d1emsa1 14 SETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTS 93 (160)
T ss_dssp CCSSCCEETTEECCGGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCCEECCCCCCCCEEEEECCCEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 65677658087577465899679799998789999974899986032224554467899999887776556554036634
Q ss_pred EEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCC--------CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6999825756686310106999952379976534557--------7666889899999999999999
Q gi|254780780|r 90 IQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIH--------PTQKIENFAKLEINAQKIRKEL 148 (155)
Q Consensus 90 ~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~~~--------~~~~~~~~~~l~~~a~~lr~~l 148 (155)
+|+++|+|+.+||+|+|+|+|||||+++|......++ +.....+.++|++.|.+||+.|
T Consensus 94 ~ni~~n~G~~aGq~V~HlHiHIIPR~~~D~~~~~~~~~~~~~~~~~~~~~~s~eel~~eA~~lR~~l 160 (160)
T d1emsa1 94 TTICVQDGKDAGQTVPHVHIHILPRRAGDFGDNEIYQKLASHDKEPERKPRSNEQMAEEAVVYRNLM 160 (160)
T ss_dssp EEEECCCSGGGTCCSSSCCEEEEEECSSCC-------------------CCCHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 7872156788880773789999777578765321444330034220027661999999999999529
No 3
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}
Probab=100.00 E-value=5e-33 Score=224.36 Aligned_cols=136 Identities=15% Similarity=0.271 Sum_probs=118.9
Q ss_pred CCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 58976545444688873178778909999417888982299994155421344027888989999997304455313526
Q gi|254780780|r 9 YDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQAD 88 (155)
Q Consensus 9 ~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~ 88 (155)
++++|+||+|.+|+ +||||+.++||+|++|.+|||+||+||+|+.+++||+++++.+++.++++++++++++++++
T Consensus 2 ~~~~C~fC~~~~~~----ii~e~~~~~v~l~~~p~~pGh~Lvipk~H~~~l~dL~~~e~~~l~~~~~~~~~~l~~~~~~~ 77 (139)
T d2oika1 2 FHKNCELCTTAGGE----ILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPD 77 (139)
T ss_dssp CCTTCHHHHSCCSE----EEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCCCCCCCE----EEEECCCEEEEECCCCCCCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 89968064676982----89978979999867999986898741000230644048899988877877868877540025
Q ss_pred CEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6699982575668631010699995237997653455776--6688989999999999999999884
Q gi|254780780|r 89 GIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPT--QKIENFAKLEINAQKIRKELQNFLK 153 (155)
Q Consensus 89 ~~ni~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~~~~~~--~~~~~~~~l~~~a~~lr~~l~~~l~ 153 (155)
++|+.. +||+|||+|+|||||+++|..+...+|.. ....+.++.++.+++||++|..-|+
T Consensus 78 ~~n~~~-----~g~~v~HlH~HviPR~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~lr~~L~~~le 139 (139)
T d2oika1 78 KINLAS-----LGNMTPHVHWHVIPRFKRDRHFPNSVWGETKRESLPQALDQGSTTALKKAISVRLD 139 (139)
T ss_dssp EEEEEE-----CCSSSCSCEEEEEEECTTSSSTTSCTTSCCCSCCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 568997-----56877768999950567887888553077878669878999999999999987609
No 4
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.2e-33 Score=226.62 Aligned_cols=105 Identities=34% Similarity=0.465 Sum_probs=101.2
Q ss_pred CCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 76545444688873178778909999417888982299994155421344027888989999997304455313526669
Q gi|254780780|r 12 QNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQ 91 (155)
Q Consensus 12 ~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~n 91 (155)
||+||+|++||+|+.+|||||.++||+|++|.++||+|||||+|+.++.+|++++...++.+.+.+.+++++...++|+|
T Consensus 1 dCiFc~I~~~e~p~~ivyede~~~af~D~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (111)
T d1kpfa_ 1 DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYR 80 (111)
T ss_dssp CCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCSCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred CCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 98222130588876689968979998668998895389863100010334436799999999999999999847897779
Q ss_pred EEEECCCCCCCEEEEEEEEEEECCC
Q ss_conf 9982575668631010699995237
Q gi|254780780|r 92 ILQFNGHAAGQTVPHLHFHVIPCKN 116 (155)
Q Consensus 92 i~~~~g~~~gq~V~HlH~HiiPR~~ 116 (155)
+++|+|+.+||+|+|+|+|||||++
T Consensus 81 i~~n~g~~agq~V~HlH~Hiip~~~ 105 (111)
T d1kpfa_ 81 MVVNEGSDGGQSVYHVHLHVLGGRQ 105 (111)
T ss_dssp EECCCHHHHTCCSSSCCEEEEESSC
T ss_pred EEEECCCCCCCCCCEEEEEEECCCC
T ss_conf 9885786577434463899708986
No 5
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}
Probab=99.98 E-value=8.4e-33 Score=222.99 Aligned_cols=108 Identities=33% Similarity=0.480 Sum_probs=102.0
Q ss_pred CCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCC
Q ss_conf 9765454446888731787789099994178889822999941554213440278889899999973044553-135266
Q gi|254780780|r 11 NQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKS-AFQADG 89 (155)
Q Consensus 11 d~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~-~~~~~~ 89 (155)
|+|+||+|++||+|+++|||||.++||+|++|.+|||+||+||+|++++.+|++++...++.+++.+.+++++ .+..+|
T Consensus 2 ~~CiFC~I~~~e~p~~ivyede~~~af~d~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (113)
T d1xqua_ 2 ENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKG 81 (113)
T ss_dssp TTCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98837744078876557986897899877999998559986231112022202015899999999999887760668885
Q ss_pred EEEEEECCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 69998257566863101069999523799
Q gi|254780780|r 90 IQILQFNGHAAGQTVPHLHFHVIPCKNGD 118 (155)
Q Consensus 90 ~ni~~~~g~~~gq~V~HlH~HiiPR~~~d 118 (155)
+|+.+|+|+.+||+|+|+|+|||||++..
T Consensus 82 ~~~~~~~g~~agq~v~HlH~Hvip~~~~~ 110 (113)
T d1xqua_ 82 YRLITNCGVAAGQTVFHLHYHLLGGVDMG 110 (113)
T ss_dssp EEEECCCSTTTTCCSCSCCEEEEESSCCC
T ss_pred EEEEEECCCCCCCCCCEEEEEEECCCCCC
T ss_conf 49988375136665375089970760047
No 6
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.97 E-value=9.4e-32 Score=216.45 Aligned_cols=126 Identities=22% Similarity=0.403 Sum_probs=111.9
Q ss_pred CCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCE
Q ss_conf 73178778909999417888982299994155421344027888989999997304455313526669998257566863
Q gi|254780780|r 24 NACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQT 103 (155)
Q Consensus 24 p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~ni~~~~g~~~gq~ 103 (155)
|+.+||||+.++||+|++|.+|||+||+||+|++++.||+++++.+++.+++++++++++.++++|+|+++|+|+.+||+
T Consensus 11 p~~ii~e~e~~~afld~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~agq~ 90 (146)
T d1fita_ 11 PSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQT 90 (146)
T ss_dssp GGGEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCC
T ss_pred CCEEEEECCCEEEEECCCCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 26599989979999877779983799995220258777668999999999999999888624662588887166556899
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC----------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 10106999952379976534557766----------68898999999999999999
Q gi|254780780|r 104 VPHLHFHVIPCKNGDNASHTNIHPTQ----------KIENFAKLEINAQKIRKELQ 149 (155)
Q Consensus 104 V~HlH~HiiPR~~~d~~~~~~~~~~~----------~~~~~~~l~~~a~~lr~~l~ 149 (155)
|+|+|+|||||+++|.......|+.. .....++|++.|++||+.++
T Consensus 91 v~HlH~HiiPR~~gD~~~~~~~~~~~~~~~~~~~~~~~r~~ee~~~~a~~lr~~~~ 146 (146)
T d1fita_ 91 VKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSEEEMAAEAAALRVYFQ 146 (146)
T ss_dssp SSSCCEEEEEECTTC--------------------CCCCCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 77799999668678766665003555020444552225889999999999998519
No 7
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.94 E-value=4.6e-27 Score=187.20 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=110.8
Q ss_pred CCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 89765454446888731787789099994178889822999941554213440278889899999973044553135266
Q gi|254780780|r 10 DNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADG 89 (155)
Q Consensus 10 dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~ 89 (155)
...|+||+|++++ ++||||++++||+|++|.+|||+||+||+|+.++.+|+++++.+|+.+++++.+++++.++.++
T Consensus 18 ~~~Cifc~i~~~~---riV~e~~~~~a~~p~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~ 94 (156)
T d1z84a2 18 TGKCCLCEAKSKH---FVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPP 94 (156)
T ss_dssp HSSCTTTTHHHHS---EEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCEEEECCCC---EEEEECCCEEEEECCCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 4998307832898---8999899899997368776767999866043533029999999999999999999998609976
Q ss_pred EEEEEECCCCC----CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 69998257566----8631010699995237997653455776668898999999999999
Q gi|254780780|r 90 IQILQFNGHAA----GQTVPHLHFHVIPCKNGDNASHTNIHPTQKIENFAKLEINAQKIRK 146 (155)
Q Consensus 90 ~ni~~~~g~~~----gq~V~HlH~HiiPR~~~d~~~~~~~~~~~~~~~~~~l~~~a~~lr~ 146 (155)
+|+++|+++.. ++.++|+|+|++||.+..+...+.. +...+....|+.|++||+
T Consensus 95 ~n~~~~~~p~~~~~~~~~~~H~hi~~~Pr~~~~aG~E~~t---g~~~n~~~PE~~A~~LR~ 152 (156)
T d1z84a2 95 YNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIGT---GCYINPVFPEDVAKVMRE 152 (156)
T ss_dssp EEEEEECCCTTCCGGGGGGCCCEEEEEECCCCCCHHHHHH---SCCEESSCHHHHHHHHHH
T ss_pred CCHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEC---CCCCCCCCHHHHHHHHHH
T ss_conf 5376623888876667606899999668777624021341---436079999999999874
No 8
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=99.93 E-value=5.2e-27 Score=186.87 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=108.2
Q ss_pred CCCCHHHHHHCCCCCC--CEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8976545444688873--17877890999941788898229999415542134402788898999999730445531352
Q gi|254780780|r 10 DNQNIFIKIIRNETNA--CRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQA 87 (155)
Q Consensus 10 dd~CiFC~Ii~ge~p~--~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~ 87 (155)
...|+||+|+++|++. ++||||+.++||+|++|.+|||+|||||+|+.++.+|+++++.+|+.+++++.+++++++++
T Consensus 16 ~~~clfcdii~~E~~~~~RiV~e~e~~~af~~~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~L~~~~~~v~~~l~~~~~~ 95 (171)
T d1guqa2 16 QKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQC 95 (171)
T ss_dssp HSSCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCCCEEEEECCHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 59975999998535578759998990999976788996358996453109934599999999999999999999986069
Q ss_pred C-CEEEEEECCCCCC--CEEEEEEEEEEECCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6-6699982575668--631010699995237997653455----776668898999999999999
Q gi|254780780|r 88 D-GIQILQFNGHAAG--QTVPHLHFHVIPCKNGDNASHTNI----HPTQKIENFAKLEINAQKIRK 146 (155)
Q Consensus 88 ~-~~ni~~~~g~~~g--q~V~HlH~HiiPR~~~d~~~~~~~----~~~~~~~~~~~l~~~a~~lr~ 146 (155)
+ ++|+..|.++..+ |.++|+|+|++||+..+....... .......+ ...|+.|++||+
T Consensus 96 ~~~y~~~~~~~p~~~~~~~~~H~Hihi~Pr~~r~~~~~~~~~g~E~~~~~~~~-~~pE~~A~~LR~ 160 (171)
T d1guqa2 96 SFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRD-LTAEQAAERLRA 160 (171)
T ss_dssp CCCEEEEEECCCSSSSCCTTCCCEEEEECCEEEETTEECCCCHHHHHTCCEES-SCHHHHHHHHHT
T ss_pred CCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCC-CCHHHHHHHHHH
T ss_conf 84336663007654677835689999846766778854220665452243478-998999999971
No 9
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.17 E-value=1.6e-10 Score=83.98 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=78.3
Q ss_pred CCHHHHHHCCCCCCCEEEECCE----EEEEECCC----CCCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7654544468887317877890----99994178----88982299994155-421344027888989999997304455
Q gi|254780780|r 12 QNIFIKIIRNETNACRVYEDDI----LLAIMDIM----PRNPGHVLIIPKSR-IRDIFEAPPEILSQIAFLIKKIAIACK 82 (155)
Q Consensus 12 ~CiFC~Ii~ge~p~~~v~E~d~----~~afld~~----P~~~GH~lViPk~H-~~~l~dL~~~~~~~l~~~~~~v~~al~ 82 (155)
+=+++-|-.+.++.++||||+. |+.+.|.+ |...-|+|+|||+| +.++.||.++...-|..+.....+++.
T Consensus 28 ~Wv~nIL~~~~E~e~i~y~D~d~~~gFvllpD~kWd~~~~~~lhlL~I~~r~~I~SlrDL~~ehlpLL~~m~~~~~~~i~ 107 (192)
T d1vlra1 28 QWVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAIL 107 (192)
T ss_dssp HHHHHHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 78999872777654169847998877799356666888555769999976689898487888699999999999999999
Q ss_pred HH--CCCCCEEEEEECCCCCCCEEEEEEEEEEECCCC
Q ss_conf 31--352666999825756686310106999952379
Q gi|254780780|r 83 SA--FQADGIQILQFNGHAAGQTVPHLHFHVIPCKNG 117 (155)
Q Consensus 83 ~~--~~~~~~ni~~~~g~~~gq~V~HlH~HiiPR~~~ 117 (155)
+. ..++++.++++.+ ++++|||+||+.....
T Consensus 108 ~~~gi~~~~~Rig~H~~----PSv~HLHlHvi~~~~~ 140 (192)
T d1vlra1 108 KRYQVTGDRLRVYLHYL----PSYYHLHVHFTALGFE 140 (192)
T ss_dssp HHHCCCGGGEEEEEESS----CSSSSCEEEEEETTSC
T ss_pred HHHCCCHHHEEEEEECC----CCEEEEEEEEEECCCC
T ss_conf 97099735459999799----9880037899851678
No 10
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.03 E-value=3e-05 Score=51.07 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=74.6
Q ss_pred CCCCCCCHHHHHHCCCCCCCEEEE---CC---EEEEEECCCCCC---------------------CC-E-EEEEECCCCC
Q ss_conf 665897654544468887317877---89---099994178889---------------------82-2-9999415542
Q gi|254780780|r 7 THYDNQNIFIKIIRNETNACRVYE---DD---ILLAIMDIMPRN---------------------PG-H-VLIIPKSRIR 57 (155)
Q Consensus 7 ~~~dd~CiFC~Ii~ge~p~~~v~E---~d---~~~afld~~P~~---------------------~G-H-~lViPk~H~~ 57 (155)
..+++.|.||.=-....|. .+++ ++ .+.+|-+.+|.. -| | ++|-.-+|..
T Consensus 35 ~~~~~~CPfCpGne~~~~~-~~~~~~~~~~~w~vrv~~N~fPal~~~~~~~~~~~~~~~~~~~~~~G~heVIi~sp~H~~ 113 (173)
T d1z84a1 35 NPKPSSCPFCIGREQECAP-ELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSI 113 (173)
T ss_dssp ----CCCTTSTTCGGGSSC-EEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSC
T ss_pred CCCCCCCCCCCCCCCCCCC-CCEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCC
T ss_conf 8996669899887345787-520301368984698747988454666455556676764000113542456886701047
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEEEEE
Q ss_conf 13440278889899999973044553135266699982575668631010699995
Q gi|254780780|r 58 DIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113 (155)
Q Consensus 58 ~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~ni~~~~g~~~gq~V~HlH~HiiP 113 (155)
++.+++.+++..++.+.+.-.+.+.+.-+..-+.+.-|-|..+|-+.+|.|..|+.
T Consensus 114 ~l~~~~~e~i~~v~~~~~~r~~~l~~~~~i~yV~iF~N~G~~aGaSl~HPH~QI~a 169 (173)
T d1z84a1 114 QLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA 169 (173)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred CHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 84129999999999999999999971899619998714485576079887710466
No 11
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=97.90 E-value=4.8e-05 Score=49.84 Aligned_cols=106 Identities=11% Similarity=0.059 Sum_probs=70.4
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCEEEECCEEEEEECCCCCC--------------------CC-EEEEE-ECCCCCHHHHH
Q ss_conf 6566589765454446888731787789099994178889--------------------82-29999-41554213440
Q gi|254780780|r 5 SSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRN--------------------PG-HVLII-PKSRIRDIFEA 62 (155)
Q Consensus 5 s~~~~dd~CiFC~Ii~ge~p~~~v~E~d~~~afld~~P~~--------------------~G-H~lVi-Pk~H~~~l~dL 62 (155)
..+.+|.+|.||.=-. +........+-.+.+|-+.+|.. -| |-.|| .-+|..++.+|
T Consensus 43 ~~p~~~~~CPfCpgn~-~~~~~~~~~~~~vrv~~N~~pal~~~~~~~~~~~~~l~~~~~~~G~heVIi~sp~H~~~l~~~ 121 (176)
T d1guqa1 43 VLPAHDPDCFLCAGNV-RVTGDKNPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPEL 121 (176)
T ss_dssp CCCSSCTTCTTSTTCB-CTTSCBCCCCSSCEEEECTTCSCCTTCCCCCCCCCSSSCEEECCEEEEEEESCSCTTCCGGGS
T ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHC
T ss_conf 7777789998898865-556667998652154047772324676543334775310478877436888881402394348
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEEEEE
Q ss_conf 278889899999973044553135266699982575668631010699995
Q gi|254780780|r 63 PPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113 (155)
Q Consensus 63 ~~~~~~~l~~~~~~v~~al~~~~~~~~~ni~~~~g~~~gq~V~HlH~HiiP 113 (155)
+.+++..++.+.+.-...+.+.. .-+.+.-|.|+.+|-+.+|.|.-|+.
T Consensus 122 ~~~~i~~vl~a~~~R~~~l~~~i--~yv~iFkN~G~~aGaSl~HPH~QI~a 170 (176)
T d1guqa1 122 SVAALTEIVKTWQEQTAELGKTY--PWVQVFENKGAAMGCSNPHPGGQIWA 170 (176)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC--SEEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHCCCC--CEEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 89999999999999999756797--78997746685464788888710466
No 12
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]}
Probab=97.41 E-value=0.00015 Score=46.74 Aligned_cols=99 Identities=13% Similarity=0.155 Sum_probs=73.7
Q ss_pred CCCCHHHHHHCCC-CCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHH--H----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 8976545444688-873178778909999417888982299994155421344--0----27888989999997304455
Q gi|254780780|r 10 DNQNIFIKIIRNE-TNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFE--A----PPEILSQIAFLIKKIAIACK 82 (155)
Q Consensus 10 dd~CiFC~Ii~ge-~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~d--L----~~~~~~~l~~~~~~v~~al~ 82 (155)
++.|+.-+-..|. .|+..|-++..+++|.| +.-|-|.|++|...++.+++ | .+..+..-+..-..+++.+.
T Consensus 9 ~~~Cvp~~~~~~~p~pC~~Vd~~~gyvvlKD--~~G~~qyLliPt~rIsGIEsP~Ll~~~~pnyf~~AW~aR~~v~~~~g 86 (220)
T d2pofa1 9 LEECLPNQQQNQNPSPCAEVKPNAGYVVLKD--LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYG 86 (220)
T ss_dssp HHTHHHHHHHHSCCTTSSEEETTTTEEEEEC--SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHT
T ss_pred HHHCCCHHHCCCCCCCCEEEECCCCEEEEEC--CCCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 7633781432189999706706899799947--99982278851555467538413278986189999987278889748
Q ss_pred HHCCCCCEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 313526669998257566863101069999
Q gi|254780780|r 83 SAFQADGIQILQFNGHAAGQTVPHLHFHVI 112 (155)
Q Consensus 83 ~~~~~~~~ni~~~~g~~~gq~V~HlH~Hii 112 (155)
+.+..+.+.+.+|. ..|-+-.|||+||=
T Consensus 87 ~~lpd~~lsLaINS--~~gRSQdQLHIHI~ 114 (220)
T d2pofa1 87 QPVPDRAVSLAINS--RTGRTQNHFHIHIS 114 (220)
T ss_dssp SCCCGGGEEEEEBC--GGGCSCCSCCEEEE
T ss_pred CCCCCHHEEEEECC--CCCCCCCCEEEEHH
T ss_conf 98883014788537--77767241365653
No 13
>d1mg4a_ d.15.11.1 (A:) Doublecortin-like kinase Dclk {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.51 E-value=4.5 Score=18.79 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=36.3
Q ss_pred EEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCEE
Q ss_conf 09999417888982299994155421344027888989999997---304455313526669
Q gi|254780780|r 33 ILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKK---IAIACKSAFQADGIQ 91 (155)
Q Consensus 33 ~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~---v~~al~~~~~~~~~n 91 (155)
.+.+|-+-+|..+|+.++|.++.+.++..| +.++...++. +..++++.+.++|..
T Consensus 5 ~I~~~rNGD~~~~g~~~~i~~r~~~s~d~l----L~~lT~~l~~~~~l~~~Vr~lyt~~G~~ 62 (101)
T d1mg4a_ 5 KVRFYRNGDRYFKGIVYAISPDRFRSFEAL----LADLTRTLSDNVNLPQGVRTIYTIDGLK 62 (101)
T ss_dssp EEEEEETTCSSCCCEEEEECTTTCSSHHHH----HHHHHHHHCCSSSSTTCCCEEEETTSSC
T ss_pred EEEEEECCCCCCCCEEEEECCCCCCCHHHH----HHHHHHHHCCCCCCCCCCEEEEECCCCE
T ss_conf 999996999899989999895313899999----9999998610468987705999189982
No 14
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=22.40 E-value=23 Score=14.37 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=27.5
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 415542134402788898999999730445531
Q gi|254780780|r 52 PKSRIRDIFEAPPEILSQIAFLIKKIAIACKSA 84 (155)
Q Consensus 52 Pk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~ 84 (155)
+.||.-++.||+.+++..++..+..+.....+.
T Consensus 3 ~~kh~l~~~dls~~ei~~ll~~A~~lk~~~~~~ 35 (150)
T d1ml4a1 3 KGRDVISIRDFSKEDIETVLATAERLERELKEK 35 (150)
T ss_dssp TTCCBCCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 894976321089999999999999998752025
No 15
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]}
Probab=20.25 E-value=26 Score=14.09 Aligned_cols=11 Identities=45% Similarity=0.833 Sum_probs=7.2
Q ss_pred EEEECCEEEEE
Q ss_conf 78778909999
Q gi|254780780|r 27 RVYEDDILLAI 37 (155)
Q Consensus 27 ~v~E~d~~~af 37 (155)
+|||||.++|+
T Consensus 3 IlyeD~~ilvv 13 (227)
T d1v9ka_ 3 IMYEDDHILVL 13 (227)
T ss_dssp EEEECSSEEEE
T ss_pred EEEECCCEEEE
T ss_conf 99967999999
Done!