RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein
[Candidatus Liberibacter asiaticus str. psy62]
(155 letters)
>gnl|CDD|182648 PRK10687, PRK10687, purine nucleoside phosphoramidase; Provisional.
Length = 119
Score = 64.9 bits (158), Expect = 9e-12
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 12 QNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIA 71
+ IF KIIR E + VY+D+++ A DI P+ P H+LIIP I + + E
Sbjct: 4 ETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAE---HEQ 60
Query: 72 FLIKKIAIACKSAFQA----DGIQILQFNGHAAGQTVPHLHFHVI 112
L + I +A K A Q DG +++ GQ V H+H H++
Sbjct: 61 ALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLL 105
>gnl|CDD|152404 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding.
This family consists of several scavenger mRNA decapping
enzymes (DcpS) and is the C-terminal region. DcpS is a
scavenger pyrophosphatase that hydrolyses the residual
cap structure following 3' to 5' decay of an mRNA. The
association of DcpS with 3' to 5' exonuclease exosome
components suggests that these two activities are linked
and there is a coupled exonucleolytic decay-dependent
decapping pathway. The C-terminal domain contains a
histidine triad (HIT) sequence with three histidines
separated by hydrophobic residues. The central histidine
within the DcpS HIT motif is critical for decapping
activity and defines the HIT motif as a new mRNA
decapping domain, making DcpS the first member of the
HIT family of proteins with a defined biological
function.
Length = 113
Score = 60.3 bits (147), Expect = 2e-10
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 14 IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFL 73
+F II E VYEDD +A DI P+ P H+L+IPK I+ + + E L + +
Sbjct: 3 VFCIIINGEEPERIVYEDDGFVAFKDIKPKAPLHLLVIPKKHIKSLRDLTKEHLPLLGHM 62
Query: 74 IKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVI 112
+ K + +L+ H G +V HLH HVI
Sbjct: 63 REVAKKIAKEKYNEGYRDVLRLGFH-YGPSVYHLHLHVI 100
>gnl|CDD|182570 PRK10586, PRK10586, putative oxidoreductase; Provisional.
Length = 362
Score = 30.8 bits (70), Expect = 0.14
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 54 SRIRDIFEAPPEILSQIAFLIKKIAIACK-----SAFQADGIQILQFNGHAAGQTVPHL 107
+ D F E LS+ ++ + AIA AF+ G + + F GH + V L
Sbjct: 23 DHLHDFF--TDEQLSRAVWIYGERAIAAAQPYLPPAFELPGAKHILFRGHCSESDVAQL 79
>gnl|CDD|129313 TIGR00209, galT_1, galactose-1-phosphate uridylyltransferase,
family 1. This enzyme is involved in glucose and
galactose interconversion. This model describes one of
two extremely distantly related branches of the model
pfam01087 from PFAM.
Length = 347
Score = 30.7 bits (69), Expect = 0.17
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 45 PGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQAD-----GIQILQFNGHA 99
P L++PK+ + I + S +A ++KK+ + F+ G FNG
Sbjct: 230 PFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEE 289
Query: 100 AGQTVPHLHFH 110
H HF+
Sbjct: 290 NQHWQLHAHFY 300
>gnl|CDD|131798 TIGR02751, PEPCase_arch, phosphoenolpyruvate carboxylase, archaeal
type. This family is the archaeal-type
phosphoenolpyruvate carboxylase, although not every host
species is archaeal. These sequences bear little
resemblance to the bacterial/eukaryotic type. The
members from Sulfolobus solfataricus and
Methanothermobacter thermautotrophicus were verified
experimentally, while the activity is known to be
present in a number of other archaea.
Length = 506
Score = 29.7 bits (67), Expect = 0.36
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 33 ILLAIMDIMPRNPGHVLIIPKSRIRDIFEA-------PPEILSQIAFLIKKIAIACKSAF 85
+LL ++ +PRN RI IFE EIL+ + +K +S
Sbjct: 97 LLLETLESIPRNYDVAREFYDERIAPIFEVILPMTTSADEILN-VHQYYEKAVAGKQSIE 155
Query: 86 QADGIQILQFNG 97
D + + ++ G
Sbjct: 156 LYDEVTVKEWLG 167
>gnl|CDD|178650 PLN03103, PLN03103, GDP-L-galactose-hexose-1-phosphate
guanyltransferase; Provisional.
Length = 403
Score = 28.1 bits (63), Expect = 1.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 46 GHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQI-LQFNGHAAGQTV 104
GHVL++P+ + + P+ + +FL+ A A +A+ + +N A T+
Sbjct: 183 GHVLLVPR-----VLDCLPQRIDPDSFLL-----ALYMAAEANNPYFRVGYNSLGAFATI 232
Query: 105 PHLHFH 110
HLHF
Sbjct: 233 NHLHFQ 238
>gnl|CDD|165505 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 27.6 bits (61), Expect = 1.4
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 32 DILLAIMDIMPRNPGHVLIIPKSRIRD--------IFEAPPEILSQIAFL 73
D+++ IM P GHVL K + + ++ + +S +AF+
Sbjct: 2163 DVMVTIMACTP---GHVLTFSKLDLINQYDFMDKTLYNVLTDSISTVAFV 2209
>gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC;
Provisional.
Length = 319
Score = 27.0 bits (60), Expect = 2.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 13/44 (29%)
Query: 33 ILLAIMDIMPRNPGHVLIIP--KSRIRDIFEAPPEILSQIAFLI 74
++LAIM IIP + +RD+FE P ++ + A+ I
Sbjct: 175 VILAIM-----------IIPYIAAVMRDVFEQTPVMMKESAYGI 207
>gnl|CDD|182329 PRK10245, adrA, diguanylate cyclase AdrA; Provisional.
Length = 366
Score = 26.3 bits (58), Expect = 3.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 18 IIRNETNACRVYEDDILLAIMDI 40
++RNE + CR + D L I+DI
Sbjct: 222 LLRNEFDNCRRHHRDATLLIIDI 244
>gnl|CDD|163375 TIGR03649, ergot_EASG, ergot alkaloid biosynthesis protein,
AFUA_2G17970 family. This family consists of fungal
proteins of unknown function associated with secondary
metabolite biosynthesis, such as of the ergot alkaloids
such as ergovaline. Nomenclature differs because gene
order differs - this is EasG in Neotyphodium lolii but
is designated ergot alkaloid biosynthetic protein A in
several other fungi.
Length = 285
Score = 26.2 bits (58), Expect = 4.1
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 53 KSRIRDIFEAPPEILSQIAFLIKKIAIACKSA---FQADGIQILQFNGHAAGQTVPHLHF 109
+ I ++ P I +IK I A F I++ G A GQ H H
Sbjct: 65 EPEISAVYLVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQV--HAHL 122
Query: 110 HVIPCKNGDNASHTNIHPTQKIENFAKLEINAQKIRKE 147
+ +T + PT +ENF E + + IRKE
Sbjct: 123 DSL-----GGVEYTVLRPTWFMENF-SEEFHVEAIRKE 154
>gnl|CDD|148079 pfam06254, DUF1019, Protein of unknown function (DUF1019).
Family of uncharacterized proteins found in
Proteobacteria.
Length = 88
Score = 25.8 bits (57), Expect = 4.7
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 12 QNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIA 71
Q IF + + +T A R ++ AI+ +P L S + + A E+
Sbjct: 11 QKIF-RWLDGDTKAAREKVQALIPAILAALPPELRARLTSGDSTMYLLALAEKELSEAKE 69
Query: 72 FLI 74
++
Sbjct: 70 AVL 72
>gnl|CDD|131701 TIGR02653, Lon_rel_chp, conserved hypothetical protein. This model
describes a protein family of unknown function, about
690 residues in length, in which some members show
C-terminal sequence similarity to Pfam model pfam05362,
which is the Lon protease C-terminal proteolytic domain,
from MEROPS family S16. However, the annotated catalytic
sites of E. coli Lon protease are not conserved in
members of this family. Members have a motif
GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif
GxxGxGK[ST].
Length = 675
Score = 24.8 bits (54), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 50 IIPKSRIRDIFEAPPEILS--QIAFLIKKIAIACKS 83
+IP S RDI P E+ S QI+F + K+
Sbjct: 636 LIPMSSARDIPTVPAELFSKFQISFYSDPVDAVYKA 671
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.137 0.402
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,501,564
Number of extensions: 150782
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 19
Length of query: 155
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 70
Effective length of database: 4,157,793
Effective search space: 291045510
Effective search space used: 291045510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)