RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein
[Candidatus Liberibacter asiaticus str. psy62]
(155 letters)
>3lb5_A HIT-like protein involved in cell-cycle regulation; niaid, seattle
structural genomics center for infectious disease,
ssgcid; 1.90A {Bartonella henselae}
Length = 161
Score = 131 bits (331), Expect = 6e-32
Identities = 70/140 (50%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 9 YDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILS 68
YDN NIF K+IRNE + RVYEDD ++A MDIMP+ PGH L+IPK R++ +A E L
Sbjct: 26 YDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLF 85
Query: 69 QIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPT 128
+ ++KIA A K AFQADGI ++QFN A+ QTV HLHFH+IP G +
Sbjct: 86 PVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELT----PHN 141
Query: 129 QKIENFAKLEINAQKIRKEL 148
I LE NA+KIR L
Sbjct: 142 NIITPTEILEENAKKIRAAL 161
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
nitrilase, nucleotide-binding protein, cancer; 2.80A
{Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Length = 440
Score = 122 bits (307), Expect = 3e-29
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 8/131 (6%)
Query: 26 CRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAF 85
Y +++ P GHVL+ PK + + + + + + KK+ +
Sbjct: 310 HIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHH 369
Query: 86 QADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNI--------HPTQKIENFAKL 137
I +G AGQTVPH+H H++P + GD + P +K + ++
Sbjct: 370 NVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDNEIYQKLASHDKEPERKPRSNEQM 429
Query: 138 EINAQKIRKEL 148
A R +
Sbjct: 430 AEEAVVYRNLM 440
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, hydrola structural genomics; HET: AMP;
1.90A {Mycobacterium smegmatis str}
Length = 149
Score = 110 bits (277), Expect = 1e-25
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 14 IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFL 73
+F I+ + A R+YED+ L I+DI P GH L+IPK+ D+ + PPE ++ +A +
Sbjct: 8 VFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAV 67
Query: 74 IKKIAIAC-KSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIE 132
++IA A +S ADG I +G AA QTV H+H HV+P +NGD S ++
Sbjct: 68 GQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKGMVMRRDP 127
Query: 133 NFAKLEINAQKIRKELQ 149
+ + + +R L
Sbjct: 128 DREES---GRLLRAALA 141
>3ksv_A Uncharacterized protein; HIT family, structural genomics,
structural genomics of pathogenic protozoa consortium,
SGPP; 1.90A {Leishmania major}
Length = 149
Score = 108 bits (271), Expect = 5e-25
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 14 IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFL 73
IF KII+ + +V E LA MDI P + GH+L+IPK + E E + + L
Sbjct: 14 IFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVL 73
Query: 74 IKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIEN 133
+ K + A + +LQ NG A Q VPH+HFH+IP + +
Sbjct: 74 LAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKIGWDTVKVAS- 132
Query: 134 FAKLEINAQKIRKELQ 149
+L +A++ + +
Sbjct: 133 -DELAEDAKRYSEAIA 147
>3imi_A HIT family protein; structural genomics, infectious diseases,
center for structural genomics of infectious diseases,
unknown function; 2.01A {Bacillus anthracis str}
Length = 147
Score = 107 bits (267), Expect = 1e-24
Identities = 52/143 (36%), Positives = 70/143 (48%)
Query: 7 THYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEI 66
H + IF KII + +VYED+ +LA +DI GH L+IPK +DIF PEI
Sbjct: 5 NHTADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEI 64
Query: 67 LSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIH 126
S I ++ KIA A K+ F G +L NG AGQTV H H H+IP ++
Sbjct: 65 ASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWK 124
Query: 127 PTQKIENFAKLEINAQKIRKELQ 149
Q L+ A I ++
Sbjct: 125 SHQNEYTMENLQNIASTIANSVK 147
>1kpf_A Protein kinase C interacting protein; protein kinase inhibitor,
PKCI-1, HIT protein family, histidine triad protein
family, nucleotidyl hydrolase; HET: AMP; 1.50A {Homo
sapiens} SCOP: d.13.1.1 PDB: 1kpa_A 1kpc_A 1av5_A*
1kpe_A* 1kpe_B* 1kpb_A* 1rzy_A* 4rhn_A* 3rhn_A* 5rhn_A*
6rhn_A
Length = 126
Score = 106 bits (265), Expect = 2e-24
Identities = 36/116 (31%), Positives = 52/116 (44%)
Query: 1 MKEKSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIF 60
+ + IF KIIR E A ++EDD LA DI P+ P H L+IPK I I
Sbjct: 5 IAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQIS 64
Query: 61 EAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKN 116
A + S + L+ G +++ G GQ+V H+H HV+ +
Sbjct: 65 VAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQ 120
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein,
GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB:
3n1t_A*
Length = 119
Score = 105 bits (264), Expect = 4e-24
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 12 QNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIA 71
+ IF KIIR E + VY+DD++ A DI P+ P H+LIIP I + + E +
Sbjct: 4 ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALG 63
Query: 72 FLIKKIA-IACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113
+I A IA + DG +++ GQ V H+H H++
Sbjct: 64 RMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLG 106
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein,
putative human tumor suppressor, advanced photon source,
APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB:
1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Length = 147
Score = 105 bits (264), Expect = 4e-24
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 28 VYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQA 87
+ ++ A+++ P PGHVL+ P + + P+ ++ + +++ + F
Sbjct: 16 FLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHG 75
Query: 88 DGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIENFAKLEIN------- 140
+ +G AGQTV H+H HV+P K GD + +I+ + + +
Sbjct: 76 TSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSEEEM 135
Query: 141 ---AQKIRKELQ 149
A +R Q
Sbjct: 136 AAEAAALRVYFQ 147
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT
protein, HIT protein, adenosine 5'- monophosphoramidase;
HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A*
1rzy_A* 3o1z_A 3o1x_A* 1kpe_B* 1kpb_A* 1kpf_A* 1kpa_A
1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Length = 126
Score = 105 bits (262), Expect = 6e-24
Identities = 36/116 (31%), Positives = 51/116 (43%)
Query: 1 MKEKSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIF 60
+ + IF KIIR E A ++EDD LA DI P+ P H L+IPK I I
Sbjct: 5 IAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQIS 64
Query: 61 EAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKN 116
A S + L+ G +++ G GQ+V H+H HV+ +
Sbjct: 65 AAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQ 120
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle
regulation, NYSGXRC, structural genomics, protein
structure initiative; 2.30A {Bacillus subtilis} SCOP:
d.13.1.1
Length = 145
Score = 103 bits (257), Expect = 2e-23
Identities = 46/142 (32%), Positives = 67/142 (47%)
Query: 8 HYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEIL 67
H IF KII + + +VYED+ +LA +DI GH L+IPK+ I +++E E+
Sbjct: 2 HCAENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELA 61
Query: 68 SQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHP 127
Q + KIA A + F+ G+ L NG AGQ+V H H H+IP +
Sbjct: 62 KQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKT 121
Query: 128 TQKIENFAKLEINAQKIRKELQ 149
L+ + I K L
Sbjct: 122 HADDYKPEDLQNISSSIAKRLA 143
>3oj7_A Putative histidine triad family protein; hydrolase, structural
genomics, seattle structural genomics for infectious
disease, ssgcid; 1.40A {Entamoeba histolytica} PDB:
3omf_A*
Length = 117
Score = 101 bits (252), Expect = 8e-23
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 14 IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFL 73
IF KI + + + VYEDD + A DI P P H+L+IPK I + E E + I +
Sbjct: 10 IFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKV 69
Query: 74 IKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113
+ K+++ K +G +++ G AGQTV H+HFH++
Sbjct: 70 LYKVSLIGK-KECPEGYRVVNNIGEDAGQTVKHIHFHILG 108
>1xqu_A HIT family hydrolase; protein structure initiative, PSI, southeast
collaboratory for structural genomics, secsg; 2.30A
{Clostridium thermocellum} SCOP: d.13.1.1
Length = 147
Score = 97.1 bits (241), Expect = 2e-21
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 13 NIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAF 72
+F KII+ E + YED+ ++AI DI P P HVLIIPK I ++ E +
Sbjct: 37 CVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILID 96
Query: 73 LIKKI-AIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113
+ K +A G +++ G AAGQTV HLH+H++
Sbjct: 97 IHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLG 138
>2eo4_A 150AA long hypothetical histidine triad nucleotide-binding protein;
HIT family, structural genomics, NPPSFA; 1.80A
{Sulfolobus tokodaii}
Length = 149
Score = 91.9 bits (227), Expect = 5e-20
Identities = 46/137 (33%), Positives = 74/137 (54%)
Query: 14 IFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFL 73
F II E VYED+ AI+D P + GH L+IPK + EA + L+++A +
Sbjct: 2 TFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKV 61
Query: 74 IKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIEN 133
+K +++ K A +ADG+++L G +AGQ + HLH H+IP GD +K +
Sbjct: 62 VKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDIFKSFKPRKEQE 121
Query: 134 FAKLEINAQKIRKELQN 150
E+ + IR+ ++N
Sbjct: 122 KEYYELLQKIIRESIEN 138
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; 1.50A {Vibrio fischeri ES114}
Length = 149
Score = 85.0 bits (210), Expect = 7e-18
Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 15/135 (11%)
Query: 18 IIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKI 77
I+ C+V ++ P +L+ +++I E Q +
Sbjct: 14 IVLGNLPLCKVL-------LIK-EDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAV 65
Query: 78 AIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNASHTNI--HPTQKIENFA 135
A + F D N A G VP LH H I D A + + T I +
Sbjct: 66 AQLLEDNFSPDK-----INIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQS 120
Query: 136 KLEINAQKIRKELQN 150
+R +L N
Sbjct: 121 SQTQLVDLLRDKLSN 135
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily,
PSI-2, NYSGXRC, structural genomics, protein structure
initiative; 1.75A {Bradyrhizobium japonicum}
Length = 149
Score = 84.2 bits (208), Expect = 1e-17
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 42 PRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAG 101
P +L+ + +I + +Q+ I +++ A K + D N A G
Sbjct: 35 ANYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDK-----LNIAALG 89
Query: 102 QTVPHLHFHVIPCKNGDNASHTNI--HPTQKIENFAKLEINAQKIRKELQ 149
VP LH H+I + GD A + + +++ +R+++
Sbjct: 90 NLVPQLHVHIIARRTGDAAWPRPVWGVMQPLAHDATEVQNFISALRRKIW 139
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Length = 135
Score = 82.2 bits (203), Expect = 4e-17
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 42 PRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAG 101
R P +L+ ++ I+++FE P + + F +A K A A+ N A G
Sbjct: 32 RRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEK-----INIGALG 86
Query: 102 QTVPHLHFHVIPCKNGDNASHTNI--HPTQKIENFAKLEINAQKIRKEL 148
V LH HVI + GD + + + A +I + L
Sbjct: 87 NIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 135
>2oik_A Histidine triad (HIT) protein; YP_546612.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.65A {Methylobacillus flagellatus KT} SCOP: d.13.1.1
Length = 154
Score = 78.4 bits (192), Expect = 7e-16
Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 15/151 (9%)
Query: 5 SSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPP 64
+ + E +++D + + PG +I ++++ + P
Sbjct: 4 RTMSFHKNCELCTTAGGEI----LWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRP 59
Query: 65 EILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIPCKNGDNA---- 120
+ ++ + A + + D + N + G PH+H+HVIP D
Sbjct: 60 AERDHLMLVVFAVEEAVREVMRPD-----KINLASLGNMTPHVHWHVIPRFKRDRHFPNS 114
Query: 121 --SHTNIHPTQKIENFAKLEINAQKIRKELQ 149
T + + + I L
Sbjct: 115 VWGETKRESLPQALDQGSTTALKKAISVRLD 145
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc,
AMP, structural genomics, protein structure initiative,
CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP:
d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Length = 351
Score = 74.5 bits (182), Expect = 1e-14
Identities = 12/117 (10%), Positives = 29/117 (24%), Gaps = 4/117 (3%)
Query: 1 MKEKSSTHYDNQNIFIKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIF 60
+ + Y + + ++ + E +++ P + IIPK
Sbjct: 201 SRLDGTKDYFEETGKCCLCEAKSKHFVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFH 260
Query: 61 EAPPEILSQIAFLIKKIAIACKSAFQAD----GIQILQFNGHAAGQTVPHLHFHVIP 113
+ L+K + I + H ++P
Sbjct: 261 HLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVP 317
Score = 29.8 bits (66), Expect = 0.26
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 37 IMDIMPRNPGHVLIIPKSRIR-DIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQILQF 95
+ H ++I + + P + I KK + IQ+ +
Sbjct: 114 TSRTIVGFGFHDVVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKN 173
Query: 96 NGHAAGQTVPHLHFHVIP 113
G +AG ++ H H ++
Sbjct: 174 QGASAGASMSHSHSQMMA 191
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI, hydrolase; HET: MSE; 1.20A {Marinobacter aquaeolei}
Length = 137
Score = 73.0 bits (179), Expect = 2e-14
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 7/110 (6%)
Query: 42 PRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQILQFNGHAAG 101
P +L+ S IR+I+E P E ++ F ++ F D N A G
Sbjct: 30 NTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDK-----MNVAALG 84
Query: 102 QTVPHLHFHVIPCKNGDNASHTNIHPTQKIENF--AKLEINAQKIRKELQ 149
VP LH H I GD A + Q + + K++ L+
Sbjct: 85 NMVPQLHLHHIVRYQGDPAWPGPVWGKQPPVPYTEEQQASVKAKLQPLLE 134
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase,
galactose metabolism; HET: GDU; 1.80A {Escherichia coli}
SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Length = 348
Score = 69.1 bits (168), Expect = 5e-13
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 3/114 (2%)
Query: 1 MKEKSSTHYDNQNIFIKIIRNETNACR--VYEDDILLAIMDIMPRNPGHVLIIPKSRIRD 58
+K + + ++ E V E + LA++ P L++PK+ +
Sbjct: 184 RLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLR 243
Query: 59 IFEAPPEILSQIAFLIKKIAIACKSAFQA-DGIQILQFNGHAAGQTVPHLHFHV 111
I + S +A +KK+ + FQ + G+ H H
Sbjct: 244 ITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHA 297
Score = 31.7 bits (71), Expect = 0.084
Identities = 11/110 (10%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Query: 39 DIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADG-IQILQFNG 97
+I ++ + ++K + +Q+ + G
Sbjct: 98 RCQSARGTSRVICFSPDHSKTLPELS--VAALTEIVKTWQEQTAELGKTYPWVQVFENKG 155
Query: 98 HAAGQTVPHLHFHVIPCKNGDNASHTNIHPTQKIENFAKLEINAQKIRKE 147
A G + PH + N + ++ K + +++E
Sbjct: 156 AAMGCSNPHPGGQIWANSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRE 205
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm,
hydrolase, nonsense-mediated mRNA decay, nucleus,
polymorphism, structural genomics; HET: DD2; 1.80A {Homo
sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Length = 301
Score = 41.7 bits (98), Expect = 7e-05
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 28 VYEDD------ILLAIM--DIMPRNPGHVLIIPKSR-IRDIFEAPPEILSQIAFLIKKIA 78
V+E+ +L+ + + + +++ I R IR + + PE + L +
Sbjct: 154 VFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPE---HLPLLRNILH 210
Query: 79 IACKSAFQADGIQILQFN-GHAAGQTVPHLHFHVI 112
++ Q ++ + HLH H
Sbjct: 211 QGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFT 245
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 2006
Score = 28.4 bits (63), Expect = 0.70
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 48/118 (40%)
Query: 29 YEDDILLAIMDIMPRNPGHVLI----IPKSRIRD-----IFE------------------ 61
++D +I+DI+ NP ++ I RIR+ IFE
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 62 --------APPEILSQIAFLIKKIAIACKSAFQ---------ADGIQILQFNGHAAGQ 102
+ +LS F + + K+AF+ AD F GH+ G+
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA----TFAGHSLGE 1766
Score = 28.0 bits (62), Expect = 1.1
Identities = 17/168 (10%), Positives = 45/168 (26%), Gaps = 69/168 (41%)
Query: 17 KIIRNETNACRVYEDDILLAIMDIMPRNPGHVLI----IPKSRI---------------- 56
++I+N A + + + L +++
Sbjct: 121 ELIKNYITARIMAKRPF--------DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 57 -RDIFEA-PP---EILSQIAFLIKKIAIACKSAFQAD-----GIQILQFNGHAAGQTVP- 105
RD+++ +++ A + ++ ++ A+ G+ IL++ + P
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELI---RTTLDAEKVFTQGLNILEWLENP--SNTPD 227
Query: 106 --HL----------------HFHVIPCKNGDNASHTNIHPTQKIENFA 135
+L H+ V K P +
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVT-AKL------LGFTPGELRSYLK 268
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein
structure initiative, PSI, joint center for structural
genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1
PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Length = 350
Score = 27.5 bits (61), Expect = 1.4
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 17/98 (17%)
Query: 28 VYEDD------ILLAIM--DIMPRNPGHVLIIPKSR----IRDIFEAPPEILSQIAFLIK 75
V+E+ +L+ + + + +++ I R +RD+ +L I +
Sbjct: 201 VFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQ 260
Query: 76 KIAIACKSAFQADGIQILQFNGHAAGQTVPHLHFHVIP 113
+ A +Q G + L+ H + HLH H
Sbjct: 261 E---AILKRYQVTGDR-LRVYLHYL-PSYYHLHVHFTA 293
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 2.8
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 14/41 (34%)
Query: 3 EKSSTHYDNQNIFIKIIRNETNACRVYEDDI--LLAIMDIM 41
EK + +K ++ + ++Y DD LAI M
Sbjct: 18 EKQA---------LKKLQA---SLKLYADDSAPALAIKATM 46
>3k4i_A Uncharacterized protein; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, NYSGXRC,; 1.69A {Pseudomonas syringae PV}
Length = 244
Score = 26.2 bits (57), Expect = 2.9
Identities = 4/53 (7%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 26 CRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIA 78
+ D+++ + +++P+ ++ + +I+ I+
Sbjct: 163 ITIQPGDLMVC-------DGSGCVVVPQQLAAEVVLRARAVEQTERRIIEAIS 208
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A
{Bacteriophage phi-29}
Length = 334
Score = 25.8 bits (56), Expect = 4.7
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 91 QILQFNGHAAGQTVPHLHFHVIPCKNGDNASH 122
++ G T H HF+VI K +
Sbjct: 263 DLMGHTGIGGNVTGDHWHFNVIDGKEYQGWTK 294
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural
genomics, PSI-2, protein structure initiative; 1.70A
{Pseudomonas aeruginosa}
Length = 176
Score = 25.2 bits (54), Expect = 7.4
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 4/78 (5%)
Query: 16 IKIIRNETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIK 75
I+ + ++ L + V R+ FE+P
Sbjct: 64 IRAELPDFTLYKISPTRFGLLLPRQQQEETESVC----LRLLRAFESPVVCRGIPIKANV 119
Query: 76 KIAIACKSAFQADGIQIL 93
+ + + DG Q
Sbjct: 120 GLGVLPLADDTLDGDQDW 137
>3c4r_A Uncharacterized protein; PSI-II, structural genomics, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.30A {Escherichia coli O6}
Length = 151
Score = 24.9 bits (54), Expect = 7.8
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 12 QNIFIKIIRNETNACRVYEDDILLAIMDIMPR 43
Q IF + + +T +L AI MP
Sbjct: 58 QKIF-RWVEKDTPDAVEKIQALLPAIEKSMPP 88
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD,
transit peptide; 2.00A {Homo sapiens} PDB: 2x36_C
Length = 207
Score = 25.0 bits (54), Expect = 7.9
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 43 RNPGHVLIIPKSRIRDIFEAPPEILSQIAF 72
R +++P +D ++ I +
Sbjct: 152 RAGVTCIVLPAENKKDFYDLAAFITEGLEV 181
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.137 0.402
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,376,195
Number of extensions: 62250
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 37
Length of query: 155
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 71
Effective length of database: 3,656,734
Effective search space: 259628114
Effective search space used: 259628114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)