HHsearch alignment for GI: 254780781 and conserved domain: COG1208

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].

Probab=98.33  E-value=1.6e-06  Score=60.48  Aligned_cols=65  Identities=37%  Similarity=0.478  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEECCCCCCCEEECCCCEEECCCEEECCEEECCCCEEEEEEEECCC
Q ss_conf             53367720156612322047306868812321121005776564487258478218578468884588566300465278
Q gi|254780781|r  138 AYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKS  217 (285)
Q Consensus       138 A~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD~v~IGa~s~I~~Gv~Ig~gavIgaG~vit~s  217 (285)
T Consensus       280 ~~ig~~~~I~~~~~i~~-Sii~~~~~i~~~~~i~~---------sIi~~~~~ig~~~-~-----i~d-~~~g~~~~i~~g  342 (358)
T COG1208         280 TVIGEGVTIGNGVEIKN-SIIMDNVVIGHGSYIGD---------SIIGENCKIGASL-I-----IGD-VVIGINSEILPG  342 (358)
T ss_pred             CEECCCCEECCCCEEEE-EEEECCCEECCCCEECC---------EEECCCCEECCCC-E-----EEE-EEECCCEEECCC
T ss_conf             78999988899877875-48877879888888820---------6981885999861-5-----701-586366086276


Q ss_pred             CE
Q ss_conf             33
Q gi|254780781|r  218 TK  219 (285)
Q Consensus       218 t~  219 (285)
T Consensus       343 ~~  344 (358)
T COG1208         343 VV  344 (358)
T ss_pred             EE
T ss_conf             18