HHsearch alignment for GI: 254780781 and conserved domain: PRK13627
>PRK13627 carnitine operon protein CaiE; Provisional.
Probab=99.64 E-value=2.7e-15 Score=114.26 Aligned_cols=124 Identities=23% Similarity=0.358 Sum_probs=84.2
Q ss_pred CCHHHCCCCCCCCCCHHHHHHCCCCCCCCCEECCCCCCCCCCEEEC--CEEECCCCCCCCCCCCCCCEE----CCEEEEC
Q ss_conf 2011017753236520234424751025431035640066514620--103023533677201566123----2204730
Q gi|254780781|r 86 STWWDKIPAKFDDWKTKDFEKHNFRIIPGTIVRHSAYIGPKAVLMP--SFVNMGAYIGEGSMIDTWSTV----GSCAQIG 159 (285)
Q Consensus 86 ~~~~DKvp~Kf~~~~~~~f~~~g~rv~P~a~vr~ga~Ig~g~vimp--~~VniGA~Ig~gt~I~~~a~I----G~~a~IG 159 (285)
T Consensus 4 y~f~g~~P~i----~~~afIap~A~viGdV~ig~~~sIw~~aVlRGD~~~I----~IG~~tNIQD~~viH~~~~~~~~IG 75 (196)
T PRK13627 4 YAFEGLIPVV----HPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRL----IVQAGANLQDGCIMHGYCDTDTIVG 75 (196)
T ss_pred EECCCCCCCC----CCCEEECCCCEEEEEEEECCCCEECCCEEEECCCCCE----EECCCCEECCCCEEECCCCCCCEEC
T ss_conf 8669958722----9983889999899849999998897770895688717----9899867679837814899985888
Q ss_pred CCCEEECCCEECCEECCCCCCCEEECCCCEEECCCEEECCEEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEE
Q ss_conf 68688123211210057765644872584782185784688845885663004652783368715881464454998789
Q gi|254780781|r 160 KNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVV 239 (285)
Q Consensus 160 ~~vhI~~g~~IGGvlep~~a~pviIeD~v~IGa~s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~~~~~g~vP~~~vv 239 (285)
T Consensus 76 ~~vtIGH~ailhg---------c~Igd~~lIGmgavVldga~Ig~~~iI~AgslV~~g~~-------------ip~~~L~ 133 (196)
T PRK13627 76 ENGHIGHGAILHG---------CVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQ-------------GEKRQLL 133 (196)
T ss_pred CCEEECCCEEEEE---------EEEECCCEECCCCEEECCCEECCCCEECCCCEECCCCC-------------CCCCCEE
T ss_conf 9805878729963---------49948978846979928889999989976864579949-------------3898199