HHsearch alignment for GI: 254780781 and conserved domain: TIGR01852
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=99.66 E-value=6e-16 Score=118.22 Aligned_cols=144 Identities=25% Similarity=0.360 Sum_probs=76.5
Q ss_pred CCCCEECCCCCCCCCCEEEC-CEEECCCCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEECCCC------------
Q ss_conf 25431035640066514620-10302353367720156612322047306868812321121005776------------
Q gi|254780781|r 112 IPGTIVRHSAYIGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQ------------ 178 (285)
Q Consensus 112 ~P~a~vr~ga~Ig~g~vimp-~~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvlep~~------------ 178 (285)
T Consensus 2 HPTA~ie~gA~iG~~V~iGPf~~v~~~V~ig~g~~l~shV~i~G~T~iG~~~~i~p~A~iG~~---PQdlky~GE~t~l~ 78 (257)
T TIGR01852 2 HPTAIIEPGAEIGEDVEIGPFCIVGPGVKIGDGVELKSHVVIEGHTTIGEGTKIFPGAVIGGE---PQDLKYKGERTELI 78 (257)
T ss_pred CCCEEECCCCEECCCCEEEEEEEECCCCEECCCCEECCCEEEECCEEECCCCEEECCEEECCC---CCCCEECCCCCEEE
T ss_conf 962187886682898578018887897588688587573689677087899888076076798---85650148701799
Q ss_pred --------------------------------------------------------CCCEEECCCCEEECCCEEECCEEE
Q ss_conf --------------------------------------------------------564487258478218578468884
Q gi|254780781|r 179 --------------------------------------------------------TGPTIIEDNCFIGARSEIVEGCII 202 (285)
Q Consensus 179 --------------------------------------------------------a~pviIeD~v~IGa~s~I~~Gv~I 202 (285)
T Consensus 79 IG~~n~IRE~VTi~~GT~~g~g~T~iG~~nllMAysHvAHDC~vGn~vv~aN~a~LAGHV~vgD~a~iGG~~avHQFvRI 158 (257)
T TIGR01852 79 IGDNNTIREFVTINRGTKSGGGVTSIGNNNLLMAYSHVAHDCVVGNHVVLANNATLAGHVEVGDYAIIGGLVAVHQFVRI 158 (257)
T ss_pred ECCCCEEEEEEEECCCCCCCCCEEEECCCCEECCCCEEEECCEECCEEEEECCCEECEEEEECCEEEECCCCCEEEEEEE
T ss_conf 88965697557850662588888998887657205356124368881698136312227998889997789721101330
Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 58856630046527833687158814644549987896056-44556776657764467279896120246688899875
Q gi|254780781|r 203 REGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGS-YPSINLKGDIAGPHLYCAVIIKKVDEKTRSKTSINTLL 281 (285)
Q Consensus 203 g~gavIgaG~vit~st~i~d~~~~~~~~g~vP~~~vvvpg~-~~~~~~~~~~~~~~~~cavi~~~~d~~t~~k~~ln~~l 281 (285)
T Consensus 159 G~~aMigG~s~v~~---------------DvpPY~~~-~G~~~a~l------~GlN---~vGLrR~Gf~~~~i~~i~~ay 213 (257)
T TIGR01852 159 GRYAMIGGLSAVSK---------------DVPPYGLV-EGNSRAVL------RGLN---IVGLRRRGFDREEITAIKKAY 213 (257)
T ss_pred HHHHHHHHHCCCCC---------------CCCCCEEE-CCCCCCEE------EEEE---EEEEECCCCCHHHHHHHHHHH
T ss_conf 00232212002467---------------87761786-37875337------8870---132213787989999999998
Q ss_pred HC
Q ss_conf 11
Q gi|254780781|r 282 RD 283 (285)
Q Consensus 282 R~ 283 (285)
T Consensus 214 r~ 215 (257)
T TIGR01852 214 RL 215 (257)
T ss_pred HH
T ss_conf 87