HHsearch alignment for GI: 254780781 and conserved domain: TIGR02287

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=98.72  E-value=2.6e-08  Score=71.47  Aligned_cols=99  Identities=23%  Similarity=0.483  Sum_probs=73.1

Q ss_pred             CCCCCCCCCCEEECC----EEECCCCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEECCCCCCCEEECCCCEEECC
Q ss_conf             356400665146201----0302353367720156612322047306868812321121005776564487258478218
Q gi|254780781|r  118 RHSAYIGPKAVLMPS----FVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGAR  193 (285)
Q Consensus       118 r~ga~Ig~g~vimp~----~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD~v~IGa~  193 (285)
T Consensus        30 G~rcYvgPlASLRGDFGrIvl~eGAN~QD~CVMHGF--Pg~DTvVeenGHvGHgAiLHg---------C~vgrnaLvGMN   98 (193)
T TIGR02287        30 GKRCYVGPLASLRGDFGRIVLKEGANVQDTCVMHGF--PGQDTVVEENGHVGHGAILHG---------CRVGRNALVGMN   98 (193)
T ss_pred             CCCCEECCCCCCCCCCCCEEEECCCCCCCCCEECCC--CCCCEEEECCCCCCCCEEECC---------CEECCCCEECCC
T ss_conf             795246766313577572575348861464243672--998867606882332123515---------463252311165


Q ss_pred             CEEECCEEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEE
Q ss_conf             57846888458856630046527833687158814644549987896
Q gi|254780781|r  194 SEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVV  240 (285)
Q Consensus       194 s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~~~~~g~vP~~~vvv  240 (285)
T Consensus        99 AVVMDgAvige~sIVaA~aFVKAg~-------------E~paq~Lv~  132 (193)
T TIGR02287        99 AVVMDGAVIGERSIVAASAFVKAGA-------------EIPAQVLVV  132 (193)
T ss_pred             EEEECCCEECCCCCEEHHHHHHCCC-------------CCCCCCEEE
T ss_conf             0661664667741200203343473-------------478461266