HHsearch alignment for GI: 254780781 and conserved domain: TIGR02287
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=98.72 E-value=2.6e-08 Score=71.47 Aligned_cols=99 Identities=23% Similarity=0.483 Sum_probs=73.1
Q ss_pred CCCCCCCCCCEEECC----EEECCCCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEECCCCCCCEEECCCCEEECC
Q ss_conf 356400665146201----0302353367720156612322047306868812321121005776564487258478218
Q gi|254780781|r 118 RHSAYIGPKAVLMPS----FVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGAR 193 (285)
Q Consensus 118 r~ga~Ig~g~vimp~----~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD~v~IGa~ 193 (285)
T Consensus 30 G~rcYvgPlASLRGDFGrIvl~eGAN~QD~CVMHGF--Pg~DTvVeenGHvGHgAiLHg---------C~vgrnaLvGMN 98 (193)
T TIGR02287 30 GKRCYVGPLASLRGDFGRIVLKEGANVQDTCVMHGF--PGQDTVVEENGHVGHGAILHG---------CRVGRNALVGMN 98 (193)
T ss_pred CCCCEECCCCCCCCCCCCEEEECCCCCCCCCEECCC--CCCCEEEECCCCCCCCEEECC---------CEECCCCEECCC
T ss_conf 795246766313577572575348861464243672--998867606882332123515---------463252311165
Q ss_pred CEEECCEEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEE
Q ss_conf 57846888458856630046527833687158814644549987896
Q gi|254780781|r 194 SEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVV 240 (285)
Q Consensus 194 s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~~~~~g~vP~~~vvv 240 (285)
T Consensus 99 AVVMDgAvige~sIVaA~aFVKAg~-------------E~paq~Lv~ 132 (193)
T TIGR02287 99 AVVMDGAVIGERSIVAASAFVKAGA-------------EIPAQVLVV 132 (193)
T ss_pred EEEECCCEECCCCCEEHHHHHHCCC-------------CCCCCCEEE
T ss_conf 0661664667741200203343473-------------478461266