HHsearch alignment for GI: 254780781 and conserved domain: TIGR02287
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=98.03 E-value=8.3e-06 Score=56.14 Aligned_cols=122 Identities=20% Similarity=0.412 Sum_probs=73.2
Q ss_pred EECCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEE---------CCEEEECCCCEEECCCEECCEECCCCCCCEEECC
Q ss_conf 1035640066514620103023533677201566123---------2204730686881232112100577656448725
Q gi|254780781|r 116 IVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTV---------GSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIED 186 (285)
Q Consensus 116 ~vr~ga~Ig~g~vimp~~VniGA~Ig~gt~I~~~a~I---------G~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD 186 (285)
T Consensus 10 VVhp~ayVHP~AVLiGD-----Vi~G~rcYvgPlASLRGDFGrIvl~eGAN~QD~CVMHGFPg----------~DTvVee 74 (193)
T TIGR02287 10 VVHPEAYVHPDAVLIGD-----VIVGKRCYVGPLASLRGDFGRIVLKEGANVQDTCVMHGFPG----------QDTVVEE 74 (193)
T ss_pred CCCCCCCCCCCEEEEEE-----EEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCEECCCCC----------CCEEEEC
T ss_conf 56987734686378621-----78879524676631357757257534886146424367299----------8867606
Q ss_pred CCEEECCCEEECCEEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCC-----CCC
Q ss_conf 847821857846888458856630046527833687158814644549987896056445567766577644-----672
Q gi|254780781|r 187 NCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGSYPSINLKGDIAGPHL-----YCA 261 (285)
Q Consensus 187 ~v~IGa~s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~~~~~g~vP~~~vvvpg~~~~~~~~~~~~~~~~-----~ca 261 (285)
T Consensus 75 nGHvGHgAiL-HgC~vgrnaLvGMNAVVMD------gA-------vige~sIVaA~aFV----KAg~E~paq~Lv~GsPA 136 (193)
T TIGR02287 75 NGHVGHGAIL-HGCRVGRNALVGMNAVVMD------GA-------VIGERSIVAASAFV----KAGAEIPAQVLVVGSPA 136 (193)
T ss_pred CCCCCCCEEE-CCCEECCCCEECCCEEEEC------CC-------EECCCCCEEHHHHH----HCCCCCCCCCEEECCCC
T ss_conf 8823321235-1546325231116506616------64-------66774120020334----34734784612662873
Q ss_pred EEEEECCHH
Q ss_conf 798961202
Q gi|254780781|r 262 VIIKKVDEK 270 (285)
Q Consensus 262 vi~~~~d~~ 270 (285)
T Consensus 137 kv~R~LseQ 145 (193)
T TIGR02287 137 KVVRELSEQ 145 (193)
T ss_pred EEEECCHHH
T ss_conf 055331146