HHsearch alignment for GI: 254780781 and conserved domain: cd00208
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.69 E-value=3e-08 Score=71.10 Aligned_cols=52 Identities=33% Similarity=0.440 Sum_probs=34.3
Q ss_pred CCCCCCCCCCCCCCEECC--------EEEECCCCEEECCCEECCEECCCCCCCEEECCCCEEECCCEE
Q ss_conf 353367720156612322--------047306868812321121005776564487258478218578
Q gi|254780781|r 137 GAYIGEGSMIDTWSTVGS--------CAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEI 196 (285)
Q Consensus 137 GA~Ig~gt~I~~~a~IG~--------~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD~v~IGa~s~I 196 (285)
T Consensus 18 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~~Ig~~v~Ig~~a~I~~--------gv~IGdn~~IgagavV 77 (78)
T cd00208 18 PVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG--------GVKIGDNAVIGAGAVV 77 (78)
T ss_pred CEEECCCCEECCCCEEEECCCCCCCCCCEECCCEEECCCCEEEC--------CEEECCCCEECCCCEE
T ss_conf 26999999899998996379886678989999969986898979--------8199999999988569