HHsearch alignment for GI: 254780781 and conserved domain: cd03353

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.25  E-value=2.1e-11  Score=90.43  Aligned_cols=129  Identities=23%  Similarity=0.363  Sum_probs=61.3

Q ss_pred             CCCCCCCCCEECCCCCCCCCCEEEC-CEEECCCCCCCCCCCCCCCEE-----CCEEEECCCCEEECCCEECC------EE
Q ss_conf             4751025431035640066514620-103023533677201566123-----22047306868812321121------00
Q gi|254780781|r  107 HNFRIIPGTIVRHSAYIGPKAVLMP-SFVNMGAYIGEGSMIDTWSTV-----GSCAQIGKNVHISGGVGIGG------VL  174 (285)
Q Consensus       107 ~g~rv~P~a~vr~ga~Ig~g~vimp-~~VniGA~Ig~gt~I~~~a~I-----G~~a~IG~~vhI~~g~~IGG------vl  174 (285)
T Consensus        20 ~~v~I~p~~~I~~~v~IG~~~~Ig~~~~I-~~~~IG~~~~I~~~~vi~~~~ig~~~~IG~~~~i~~~~~I~~~~~iG~~v   98 (193)
T cd03353          20 VDVVIDPGVILEGKTVIGEDCVIGPNCVI-KDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFV   98 (193)
T ss_pred             CCCEECCCEEEECCCEECCCCEECCCEEE-CCCEECCCCEECCCEECCCCEECCCCEECCCEEECCCCEECCEEEECCCE
T ss_conf             99999898299298599999899573457-78688887400210011352517652666850765876887516742535


Q ss_pred             C--------CC------CCCCEEECCCCEEECCCEEEC-------CEEECCCCEEEEEEEECCCCEEEECCCCCEEEEEC
Q ss_conf             5--------77------656448725847821857846-------88845885663004652783368715881464454
Q gi|254780781|r  175 E--------PI------QTGPTIIEDNCFIGARSEIVE-------GCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEV  233 (285)
Q Consensus       175 e--------p~------~a~pviIeD~v~IGa~s~I~~-------Gv~Ig~gavIgaG~vit~st~i~d~~~~~~~~g~v  233 (285)
T Consensus        99 ~i~~~~ig~~~~i~h~~~igd~~Ig~~v~Ig~~~i~~n~~g~~~~~t~IGd~v~IG~~~~i~~~v~I-------------  165 (193)
T cd03353          99 EIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTI-------------  165 (193)
T ss_pred             EEECCCCCCCCEECCEEECCCCEECCCCEECCCEEEECCCCCCCCCCEECCCCEECCCCEEECCEEE-------------
T ss_conf             7644433688487724461885677788886675887343433562343356189889879898399-------------


Q ss_pred             CCCCEEECCCCCCCCC
Q ss_conf             9987896056445567
Q gi|254780781|r  234 PSYSVVVPGSYPSINL  249 (285)
Q Consensus       234 P~~~vvvpg~~~~~~~  249 (285)
T Consensus       166 G~~a~Igags~V~kdV  181 (193)
T cd03353         166 GDGATIAAGSTITKDV  181 (193)
T ss_pred             CCCCEECCCCEECCCC
T ss_conf             9998998698888423