HHsearch alignment for GI: 254780781 and conserved domain: cd03359
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.04 E-value=1.7e-09 Score=78.67 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=68.7
Q ss_pred CCCCCCCCCCEEEC-CEEECCCCCCCCCCCCCCCEECC---EEEECCCCEEECCCEECC--EE--CCCCCCCEEECCCCE
Q ss_conf 35640066514620-10302353367720156612322---047306868812321121--00--577656448725847
Q gi|254780781|r 118 RHSAYIGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGS---CAQIGKNVHISGGVGIGG--VL--EPIQTGPTIIEDNCF 189 (285)
Q Consensus 118 r~ga~Ig~g~vimp-~~VniGA~Ig~gt~I~~~a~IG~---~a~IG~~vhI~~g~~IGG--vl--ep~~a~pviIeD~v~ 189 (285)
T Consensus 5 ~~gn~I~k~a~I~G~~nI----~IG~~ssI~~~avirGD~~~I~IG~~~~I~d~~~I~~~~~~~~~~~~~~p~~IGd~v~ 80 (161)
T cd03359 5 ASGNKVSRKSVICGSQNI----VLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVF 80 (161)
T ss_pred CCCCEECCCCEEECCCCE----EECCCCEECCCCEEECCCCCEEECCCCEECCCCEEECCCCCCCCCCCCCCCEECCCEE
T ss_conf 899958776299788775----9999878999968967886549999858889989924644357788887728489879
Q ss_pred EECCCEEECCEEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEECCCC
Q ss_conf 8218578468884588566300465278336871588146445499878960564
Q gi|254780781|r 190 IGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGSY 244 (285)
Q Consensus 190 IGa~s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~~~~~g~vP~~~vvvpg~~ 244 (285)
T Consensus 81 Ig~~~~i-~~~~Ig~~v~IG~~~~I~~g~~Ig~~~-------~I~~gsvV~~~~~ 127 (161)
T cd03359 81 IGENCVV-NAAQIGSYVHIGKNCVIGRRCIIKDCV-------KILDGTVVPPDTV 127 (161)
T ss_pred ECCCEEE-ECCEECCCEEECCCCEECCCCEECCCC-------EECCCCEECCCCE
T ss_conf 8998288-488966771557981994997999998-------9988989889989