HHsearch alignment for GI: 254780781 and conserved domain: cd04646
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=1.3e-10 Score=85.51 Aligned_cols=114 Identities=22% Similarity=0.267 Sum_probs=82.3
Q ss_pred ECCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEECCEE---EECCCCEEECCCEECCE--ECCCCCCCEEECCCCEEE
Q ss_conf 0356400665146201030235336772015661232204---73068688123211210--057765644872584782
Q gi|254780781|r 117 VRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCA---QIGKNVHISGGVGIGGV--LEPIQTGPTIIEDNCFIG 191 (285)
Q Consensus 117 vr~ga~Ig~g~vimp~~VniGA~Ig~gt~I~~~a~IG~~a---~IG~~vhI~~g~~IGGv--lep~~a~pviIeD~v~IG 191 (285)
T Consensus 2 I~~~a~I~~~A~iiG-----dV~IG~~~sI~p~avIrgd~g~I~IG~~~nIqd~~~I~~~~~~~~~~g~~~~IG~~~~i~ 76 (164)
T cd04646 2 IAPGAVVCQESEIRG-----DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFE 76 (164)
T ss_pred CCCCCEECCCCEEEE-----EEEECCCCEECCCCEEEECCCCEEECCCCEECCCEEEECCCCCCCCCCCCEEECCCCEEC
T ss_conf 489879999999982-----179999998995759981437889899966669859941787777899887988998886
Q ss_pred CCCEEECCEEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEECCC
Q ss_conf 1857846888458856630046527833687158814644549987896056
Q gi|254780781|r 192 ARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGS 243 (285)
Q Consensus 192 a~s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~~~~~g~vP~~~vvvpg~ 243 (285)
T Consensus 77 ~g~~i-h~~~IG~~~lIg~~a~V~~ga~Ig~~c-------iIgags~V~~~~ 120 (164)
T cd04646 77 VGCKC-EALKIGNNNVFESKSFVGKNVIITDGC-------IIGAGCKLPSSE 120 (164)
T ss_pred CCEEE-ECCEECCCCEECCCCEECCCCEECCCC-------EECCCCCCCCCC
T ss_conf 78199-555976788896898999998999998-------999898928997