HHsearch alignment for GI: 254780781 and conserved domain: cd04646

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24  E-value=1.3e-10  Score=85.51  Aligned_cols=114  Identities=22%  Similarity=0.267  Sum_probs=82.3

Q ss_pred             ECCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEECCEE---EECCCCEEECCCEECCE--ECCCCCCCEEECCCCEEE
Q ss_conf             0356400665146201030235336772015661232204---73068688123211210--057765644872584782
Q gi|254780781|r  117 VRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCA---QIGKNVHISGGVGIGGV--LEPIQTGPTIIEDNCFIG  191 (285)
Q Consensus       117 vr~ga~Ig~g~vimp~~VniGA~Ig~gt~I~~~a~IG~~a---~IG~~vhI~~g~~IGGv--lep~~a~pviIeD~v~IG  191 (285)
T Consensus         2 I~~~a~I~~~A~iiG-----dV~IG~~~sI~p~avIrgd~g~I~IG~~~nIqd~~~I~~~~~~~~~~g~~~~IG~~~~i~   76 (164)
T cd04646           2 IAPGAVVCQESEIRG-----DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFE   76 (164)
T ss_pred             CCCCCEECCCCEEEE-----EEEECCCCEECCCCEEEECCCCEEECCCCEECCCEEEECCCCCCCCCCCCEEECCCCEEC
T ss_conf             489879999999982-----179999998995759981437889899966669859941787777899887988998886


Q ss_pred             CCCEEECCEEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEECCC
Q ss_conf             1857846888458856630046527833687158814644549987896056
Q gi|254780781|r  192 ARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGS  243 (285)
Q Consensus       192 a~s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~~~~~g~vP~~~vvvpg~  243 (285)
T Consensus        77 ~g~~i-h~~~IG~~~lIg~~a~V~~ga~Ig~~c-------iIgags~V~~~~  120 (164)
T cd04646          77 VGCKC-EALKIGNNNVFESKSFVGKNVIITDGC-------IIGAGCKLPSSE  120 (164)
T ss_pred             CCEEE-ECCEECCCCEECCCCEECCCCEECCCC-------EECCCCCCCCCC
T ss_conf             78199-555976788896898999998999998-------999898928997