HHsearch alignment for GI: 254780781 and conserved domain: cd04649
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=100.00 E-value=1.7e-33 Score=225.66 Aligned_cols=116 Identities=27% Similarity=0.444 Sum_probs=112.1
Q ss_pred CCCCCCCCEECCCCCCCCCCEEEC-CEEECCCCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEECCCCCCCEEECC
Q ss_conf 751025431035640066514620-1030235336772015661232204730686881232112100577656448725
Q gi|254780781|r 108 NFRIIPGTIVRHSAYIGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIED 186 (285)
Q Consensus 108 g~rv~P~a~vr~ga~Ig~g~vimp-~~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD 186 (285)
T Consensus 1 GvRi~~~~~VRlGAyl~~Gt~vM~egfVN~nAgt~g~~Mie--grissgv~VG~~~diggGasi~G~Ls~g~~~pi~Ig~ 78 (147)
T cd04649 1 GVRIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVE--GRISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGK 78 (147)
T ss_pred CEEECCCCEEEECCEECCCCEECCCCEEEECCCCCCCCEEE--EEEEECEEECCCCCCCCCCEEEEECCCCCCCCEEECC
T ss_conf 93744786687341887995986256798766306661687--6785156989983327861787871678823569887
Q ss_pred CCEEECCCEEECCEEECCCCEEEEEEEECCCCEEEECCCCC
Q ss_conf 84782185784688845885663004652783368715881
Q gi|254780781|r 187 NCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGE 227 (285)
Q Consensus 187 ~v~IGa~s~I~~Gv~Ig~gavIgaG~vit~st~i~d~~~~~ 227 (285)
T Consensus 79 ncliGAnsgi--Gi~lGd~cvv~aGlyi~~gTki~~~d~~~ 117 (147)
T cd04649 79 RCLLGANSGI--GISLGDNCIVEAGLYVTAGTKVTLPDNEE 117 (147)
T ss_pred CEEECCCCCC--CEEECCCCEEECCEEECCCCEEEECCCCC
T ss_conf 5076146545--84868986882445983997898626577