HHsearch alignment for GI: 254780781 and conserved domain: cd04652
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.32 E-value=1.9e-06 Score=60.08 Aligned_cols=77 Identities=23% Similarity=0.433 Sum_probs=34.8
Q ss_pred CCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEECCEEEECCCCEEECCCEECCEECCCCCCCEEECCCCEEECCCEEE
Q ss_conf 35640066514620103023533677201566123220473068688123211210057765644872584782185784
Q gi|254780781|r 118 RHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIV 197 (285)
Q Consensus 118 r~ga~Ig~g~vimp~~VniGA~Ig~gt~I~~~a~IG~~a~IG~~vhI~~g~~IGGvlep~~a~pviIeD~v~IGa~s~I~ 197 (285)
T Consensus 3 G~~~~Ig~~~~I~~S------vIG~nc~Ig~~~~i~~-sii~~~v~I~~~~~i~---------~sIIg~~~~Ig~~~~l- 65 (81)
T cd04652 3 GENTQVGEKTSIKRS------VIGANCKIGKRVKITN-CVIMDNVTIEDGCTLE---------NCIIGNGAVIGEKCKL- 65 (81)
T ss_pred CCCCEECCCCEEECC------EECCCCEECCCCEEEC-CEEECCCEECCCCEEE---------CCEEECCCEECCCCEE-
T ss_conf 798899999989679------9979999999968968-9996987989998997---------4999097999999999-
Q ss_pred CCEEECCCCEEEEE
Q ss_conf 68884588566300
Q gi|254780781|r 198 EGCIIREGSVLGMG 211 (285)
Q Consensus 198 ~Gv~Ig~gavIgaG 211 (285)
T Consensus 66 ~~~vig~~~~V~~g 79 (81)
T cd04652 66 KDCLVGSGYRVEAG 79 (81)
T ss_pred ECCEECCCCEECCC
T ss_conf 37398899898989