RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780781|ref|YP_003065194.1|
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
(285 letters)
>gnl|CDD|183330 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional.
Length = 272
Score = 466 bits (1202), Expect = e-132
Identities = 163/278 (58%), Positives = 208/278 (74%), Gaps = 8/278 (2%)
Query: 6 STLEEIIDSFFEE-SNSKNESIPQDVKDAVQSTLDLLDRGIIRIASRDDNGHWNTHQWIK 64
S L++II+ +E + + +V++AV+ +DLLD G +R+A + D+G W +QW+K
Sbjct: 2 SQLQKIIEEAWERRAELTPATADTEVREAVEEVIDLLDSGELRVAEKIDDGEWVVNQWVK 61
Query: 65 KAILLSFQINPTKIISDGNGYSTWWDKIPAKFDDWKTKDFEKHNFRIIPGTIVRHSAYIG 124
KAILLSF++N ++I G ++DK+P KF W F++ R++PG +VR AYI
Sbjct: 62 KAILLSFRLNDNQVIE--GGDFRFYDKVPLKFAGWDEARFKEAGVRVVPGAVVRRGAYIA 119
Query: 125 PKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTII 184
P VLMPS+VN+GAY+ EG+M+DTW+TVGSCAQIGKNVH+SGGVGIGGVLEP+Q P II
Sbjct: 120 PNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVII 179
Query: 185 EDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGSY 244
EDNCFIGARSE+VEG I+ EGSVLGMGVF+G+STKI DR TGE+ YG VP+ SVVVPGS
Sbjct: 180 EDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVPGSL 239
Query: 245 PSINLKGDIAGPHLYCAVIIKKVDEKTRSKTSINTLLR 282
PS + G LYCAVI+KKVD KTRSKTSIN LLR
Sbjct: 240 PSKD-----GGYSLYCAVIVKKVDAKTRSKTSINELLR 272
>gnl|CDD|130038 TIGR00965, dapD, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-succinyltransferase. The closely related TabB protein
of Pseudomonas syringae (pv. tabaci) appears to act in
the biosynthesis of tabtoxin rather than lysine. The
trusted cutoff is set high enough to exclude this gene.
Sequences below trusted also include a version of this
enzyme which apparently utilize acetate rather than
succinate (EC: 2.3.1.89).
Length = 269
Score = 351 bits (901), Expect = 2e-97
Identities = 157/276 (56%), Positives = 198/276 (71%), Gaps = 9/276 (3%)
Query: 8 LEEIIDSFFE-ESNSKNESIPQDVKDAVQSTLDLLDRGIIRIASRDDNGHWNTHQWIKKA 66
L+ II++ FE + + K+AV + LLD G +R+A + D G W ++W+KKA
Sbjct: 2 LQNIIETAFERRAEITPANADTVTKEAVNEVIALLDSGALRVAEKID-GQWKVNEWLKKA 60
Query: 67 ILLSFQINPTKIISDGNGYSTWWDKIPAKFDDWKTKDFEKHNFRIIPGTIVRHSAYIGPK 126
+LLSF+IN ++I+ + ++DK+P KF D+ F+K FR++PG VR A+I
Sbjct: 61 VLLSFRINDNQVIN--GAENRYFDKVPMKFADYDEARFKKAGFRVVPGAAVRQGAFIAKN 118
Query: 127 AVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIED 186
VLMPS+VN+GAY+ EG+M+DTW+TVGSCAQIGKNVH+SGGVGIGGVLEP+Q PTIIED
Sbjct: 119 VVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 178
Query: 187 NCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGSYPS 246
NCFIGARSEIVEG I+ EGSV+ MGVFIG+STKI DR TGEI YG VP+ SVVV G+ PS
Sbjct: 179 NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSGNLPS 238
Query: 247 INLKGDIAGPHLYCAVIIKKVDEKTRSKTSINTLLR 282
LYCAVI+KKVD KTR K SIN LLR
Sbjct: 239 -----KDGKYSLYCAVIVKKVDAKTRGKVSINELLR 269
>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-acetyltransferase. Alternate name:
tetrahydrodipicolinate N-acetyltransferase. Note that
IUBMB lists this alternate name as the accepted name.
Unfortunately, the related succinyl transferase acting
on the same substrate (EC:2.3.1.117, TIGR00695) uses the
opposite standard. We have decided to give these two
enzymes names which more clearly indicated that they act
on the same substrate.
Length = 231
Score = 115 bits (289), Expect = 1e-26
Identities = 69/184 (37%), Positives = 94/184 (51%), Gaps = 37/184 (20%)
Query: 102 KDFEKHNFRIIPGTIVRHSAYIGPKAV-LMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGK 160
D + N RI PG I+R IG AV +M + +N+GA IGEG+MID + +G A +GK
Sbjct: 80 LDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGK 139
Query: 161 NVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKI 220
NVHI G + GV+EP P +IEDN IGA + I+EG + +G+V+
Sbjct: 140 NVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVA----------- 188
Query: 221 IDRNTGEITYGEVPSYSVV--VPGSYPSINLKGDIAGPHLYCAVIIKKVDEKTRSKTSIN 278
G I +VP +VV VP A +IK+VDEKT+ KT +
Sbjct: 189 ----AGAIVTEDVPPNTVVAGVP-------------------AKVIKQVDEKTKDKTELE 225
Query: 279 TLLR 282
LR
Sbjct: 226 DDLR 229
>gnl|CDD|163332 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid
O-acetyltransferase NeuD family. These proteins contain
repeats of the bacterial transferase hexapeptide
(pfam00132), although often these do not register above
the trusted cutoff.
Length = 201
Score = 62.5 bits (153), Expect = 1e-10
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 102 KDFEKHNFR----IIPGTIVRHSAYIGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCA 156
+ + +R I P IV SA IG V+M + +N IG+ +I+T + V
Sbjct: 77 EKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDC 136
Query: 157 QIGKNVHISGGVGI-GGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMG 211
IG VHI+ GV + GGV +I + FIGA + I++G I G+++G G
Sbjct: 137 VIGDYVHIAPGVTLSGGV---------VIGEGVFIGAGATIIQGVTIGAGAIVGAG 183
Score = 48.6 bits (117), Expect = 2e-06
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 19/104 (18%)
Query: 122 YIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGP 181
I P A++ PS A IGEG++I + + +IG NV I+ G +
Sbjct: 89 LIHPSAIVSPS-----ASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEH--------D 135
Query: 182 TIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNT 225
+I D I + G +I EG VFIG II T
Sbjct: 136 CVIGDYVHIAPGVTLSGGVVIGEG------VFIGAGATIIQGVT 173
Score = 26.3 bits (59), Expect = 10.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 181 PTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTG 226
T+I + + + I EG +I G+V+ V IG + II NTG
Sbjct: 87 ATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNV-II--NTG 129
>gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase. This model describes LpxD, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species. This
protein represents the third step from
UDP-N-acetyl-D-glucosamine. The group added at this step
generally is 14:0(3-OH) (myristate) but may vary; in
Aquifex it appears to be 16:0(3-OH) (palmitate).
Length = 324
Score = 47.3 bits (113), Expect = 5e-06
Identities = 42/145 (28%), Positives = 54/145 (37%), Gaps = 35/145 (24%)
Query: 111 IIPGTIVRHSAYIGPKAVLMPSFV-NMGAYIGEGSMIDTWSTVGS-------C------- 155
I P +V SA IG + P+ V G IGE +I +G
Sbjct: 94 IHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVV 153
Query: 156 ----AQIGKNVHISGGVGIGG-----VLEPI-------QTGPTIIEDNCFIGARSEIVEG 199
Q+GKNV I G IG Q G IIED+ IGA + I G
Sbjct: 154 IYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRG 213
Query: 200 C----IIREGSVLGMGVFIGKSTKI 220
II EG+ + V I + +I
Sbjct: 214 AFDDTIIGEGTKIDNLVQIAHNCRI 238
Score = 38.0 bits (89), Expect = 0.003
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 183 IIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDR 223
I N IGA EI E II G V+G V IG ++I
Sbjct: 111 TIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPN 151
Score = 35.3 bits (82), Expect = 0.017
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 145 MIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIRE 204
++D + +G IG NV I GV IG +N IG I + +I +
Sbjct: 99 VVDPSAKIGDGVTIGPNVVIGAGVEIG--------------ENVIIGPGVVIGDDVVIGD 144
Query: 205 GSVLGMGVFIGKSTKIIDR 223
GS + V I + ++
Sbjct: 145 GSRIHPNVVIYERVQLGKN 163
Score = 30.3 bits (69), Expect = 0.55
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 140 IGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEG 199
IGEG+ ID + +IG+N I VGI G T I N IG + +
Sbjct: 220 IGEGTKIDNLVQIAHNCRIGENCIIVAQVGI--------AGSTKIGRNVIIGGQVGVAGH 271
Query: 200 CIIREGSVLGMGVFIGKS 217
I + +G + KS
Sbjct: 272 LEIGDNVTIGAKSGVTKS 289
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 46.2 bits (110), Expect = 1e-05
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 111 IIPGTIVRHSAYIGPKAVLMP-----------SFVNM-GAYIGEGSMIDTWSTVGSCAQI 158
++ + + IGP A L P +FV M A +G+GS + +G A+I
Sbjct: 314 VVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGD-AEI 372
Query: 159 GKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKST 218
G NV+I G I + TII D+ F+G+ +++V + +G+ +G G + +
Sbjct: 373 GDNVNIGAGT-ITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTR-- 429
Query: 219 KIIDRNTGEITYGEVP 234
D E+ VP
Sbjct: 430 ---DVAENELVISRVP 442
>gnl|CDD|179158 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional.
Length = 343
Score = 45.1 bits (108), Expect = 2e-05
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 28/139 (20%)
Query: 110 RIIPGTIVRHSAYIGPKAVLMP-SFVNMGAYIGEGSMI--DTW----STVGSCAQIGKNV 162
+I G + +A IG V+ + GA IG+G I D T+ +IG V
Sbjct: 114 KIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRV 173
Query: 163 HISGGVGIG----------GVLEPI-QTGPTIIEDNCFIGARSEI----VEGCIIREGSV 207
I G IG G I Q G II D+ IGA + I ++ +I EG
Sbjct: 174 IIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK 233
Query: 208 L------GMGVFIGKSTKI 220
+ V IG+ T I
Sbjct: 234 IDNLVQIAHNVVIGRHTAI 252
Score = 43.2 bits (103), Expect = 8e-05
Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 27/106 (25%)
Query: 111 IIPGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGI 170
I P ++ SA IG + P A IG G IG V I G I
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGP-----NAVIGAG------------VVIGDGVVIGAGAVI 145
Query: 171 G-GVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIG 215
G GV I +C + A I I ++ G IG
Sbjct: 146 GDGV---------KIGADCRLHANVTIYHAVRIGNRVIIHSGAVIG 182
Score = 39.0 bits (92), Expect = 0.001
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 152 VGSCAQIGKNVHISGGVGIG-GVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGM 210
+ A+IG+ V I IG GV +I D IGA + I +G I L
Sbjct: 109 IDPSAKIGEGVSIGPNAVIGAGV---------VIGDGVVIGAGAVIGDGVKIGADCRLHA 159
Query: 211 GVFIGKSTKIIDR 223
V I + +I +R
Sbjct: 160 NVTIYHAVRIGNR 172
Score = 30.9 bits (71), Expect = 0.38
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 18/60 (30%)
Query: 140 IGEGSMIDTWSTVGSC-----AQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARS 194
IG + I +IG+ I G VGI G LE I D I A S
Sbjct: 246 IGRHTAI-----AAQVGIAGSTKIGRYCMIGGQVGIAGHLE--------IGDGVTITAMS 292
Score = 30.9 bits (71), Expect = 0.42
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 20/64 (31%)
Query: 140 IGEGSMIDTWSTVGSCAQIGKNVHI------SGGVGIGGVLEPIQTGPTIIEDNCFIGAR 193
IGEG ID + V QI NV I + VGI G T I C IG +
Sbjct: 228 IGEGVKID--NLV----QIAHNVVIGRHTAIAAQVGI--------AGSTKIGRYCMIGGQ 273
Query: 194 SEIV 197
I
Sbjct: 274 VGIA 277
>gnl|CDD|162818 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal
domain of unknown function. This domain is found
exclusively in non-ribosomal peptide synthetases and
always as the final domain in the polypeptide. This
domain is roughly 700 amino acids in size and is found
in polypeptides roughly twice that size.
Length = 695
Score = 40.5 bits (95), Expect = 5e-04
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 129 LMPSFVNM-GAYIGEGSMIDT-WSTVGSCAQIGKNVHISGGVGI------GGVLEPIQTG 180
+P+ + + G IG G ID T IG + ++ G I V+ ++
Sbjct: 588 FLPAILRLLGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVM---KSD 644
Query: 181 PTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKI 220
I D +G + ++ G ++ EGSVLG + K ++
Sbjct: 645 TVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEV 684
Score = 34.0 bits (78), Expect = 0.050
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 136 MGAYIGEGSMIDTWS-------TVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNC 188
+GA IG+G I + T+G+ + K V + G G L TGP + +
Sbjct: 111 LGAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRL---HTGPVTLGRDA 167
Query: 189 FIGARSEIVEGCIIREGSVLGMG 211
FIG RS + I +G+ LG G
Sbjct: 168 FIGTRSTLDIDTSIGDGAQLGHG 190
>gnl|CDD|184644 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 40.1 bits (94), Expect = 7e-04
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 110 RIIPGTIVRHSAYIGPKAVLMPSFVNM-GAYIGEGSMIDTWSTVGSCAQIGKNVHISGGV 168
R+ GT+++ S IG +FV + + IGE + + +G A +GKNV+I G
Sbjct: 320 RLREGTVLKKSVKIG-------NFVEIKKSTIGENTKAQHLTYLGD-ATVGKNVNIGAGT 371
Query: 169 GIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGK 216
I + + PT IED FIG+ S +V I +G+++G G I +
Sbjct: 372 -ITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITE 418
Score = 34.4 bits (79), Expect = 0.040
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 115 TIVRHSAYIGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGV 173
T + + IG ++ P +F+ IGE I + + C +IG NV I
Sbjct: 250 TYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDC-EIGNNVKIIRS------ 302
Query: 174 LEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNT 225
+ ++IED+ +G S + EG ++++ +G V I KST I NT
Sbjct: 303 ----ECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKST--IGENT 348
>gnl|CDD|182500 PRK10502, PRK10502, putative acyl transferase; Provisional.
Length = 182
Score = 39.5 bits (93), Expect = 0.001
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 20/107 (18%)
Query: 121 AYIGPKAVLMPS-------FVNMGAY--IGEGSMIDTWSTVGSCAQIGKNVHISGGV--- 168
A IG V+ PS + +G Y IG+ + + IG + IS
Sbjct: 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEI----TIGAHCVISQKSYLC 107
Query: 169 -GIGGVLEP---IQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMG 211
G +P + T P +I + C++ A + G I G+V+G
Sbjct: 108 TGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGAR 154
Score = 29.1 bits (66), Expect = 1.5
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 103 DFEKHNFRIIPGTIVRHSAYIGPKA-VLMPSFVNMGAYIGEGSMIDTWSTVGS 154
D+ +F + IV IG + FV G IG G+++ S+V
Sbjct: 112 DYSDPHFDLNTAPIV-----IGEGCWLAADVFVAPGVTIGSGAVVGARSSVFK 159
>gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes.
Length = 451
Score = 39.6 bits (93), Expect = 0.001
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 110 RIIPGTIVRHSAYIGPKAVLMPSFVNM-GAYIGEGSMIDTWSTVGSCAQIGKNVHISGGV 168
R+ PG+++ +IG +FV A IG+GS S +G +IG NV+I G
Sbjct: 327 RLRPGSVLGAGVHIG-------NFVETKNARIGKGSKAGHLSYLGDA-EIGSNVNIGAGT 378
Query: 169 GIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKI-IDRNTGE 227
I + TII D FIG+ +++V + G G I + + D G
Sbjct: 379 -ITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKV------GDGATIAAGSTVTKDVPEGA 431
Query: 228 ITYGEVP 234
+
Sbjct: 432 LAISRAR 438
Score = 33.4 bits (77), Expect = 0.076
Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 41/97 (42%)
Query: 157 QIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGA----------------------RS 194
+IG++V I V +LE G I D+ IG S
Sbjct: 263 EIGRDVEIDPNV----ILE----GKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGS 314
Query: 195 EIVEGCII------REGSVLGMGVFIG-----KSTKI 220
EI EGC + R GSVLG GV IG K+ +I
Sbjct: 315 EIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARI 351
Score = 31.9 bits (73), Expect = 0.21
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 182 TIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVV 239
I IG EI I+ +G V IG I + G + +YSV+
Sbjct: 256 FDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNV--VIKAYSVL 311
>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 255
Score = 38.1 bits (89), Expect = 0.003
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 110 RIIPGTIVRHSAYIGPKAVLMP-SFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGV 168
I P ++ SA +G + P + + IG+G+ I + + +IGKN I G
Sbjct: 1 MIHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGA 60
Query: 169 GIGGVLEPIQTGPTIIEDNCFIGARS--EIVEGCIIREGSVLGMGVFIGKSTKIIDRN 224
+G EP +D + G S EI + +IREG + G G T+I + N
Sbjct: 61 VVGD--EP--------QDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDN 108
Score = 32.3 bits (74), Expect = 0.15
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 27/132 (20%)
Query: 111 IIPGTIVRHSAYIGPKAVLMPSFVNMG-AYIGEGSMIDTWSTVG------------SCAQ 157
I P ++ + IG + P V +G IG+ + I + VG S +
Sbjct: 20 IGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLE 79
Query: 158 IGKNVHISGGVGI------GGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMG 211
IG I GV I GGV T I ++ + A S + C I +L G
Sbjct: 80 IGDRNVIREGVTIHRGTKGGGV--------TRIGNDNLLMAYSHVAHDCQIGNNVILVNG 131
Query: 212 VFIGKSTKIIDR 223
+ + DR
Sbjct: 132 ALLAGHVTVGDR 143
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 37.5 bits (88), Expect = 0.004
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 121 AYIGPKAVLMPS-----FVNM-GAYIGEGSMIDTWSTVGSCAQIGKNVHISGG---VGIG 171
A++ P +V+ FV + + IGEG+ + + +G A++G+NV+I G V
Sbjct: 329 AHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGD-AEVGENVNIGCGTITVNYD 387
Query: 172 GVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMG 211
G TII DN FIG S +V + + + + G
Sbjct: 388 GK----NKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAG 423
Score = 29.8 bits (68), Expect = 0.81
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 161 NVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGS-----VLGMGVFIG 215
+ +I V IG T+IE I + I E C+I GS +G GV I
Sbjct: 259 STYIDADVEIGS--------DTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT 310
Query: 216 KSTKIIDRNTGE 227
S I + G+
Sbjct: 311 NSV-IEESKVGD 321
Score = 28.3 bits (64), Expect = 2.3
Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 28/117 (23%)
Query: 123 IGPKAVLMPSFVNMG-AYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGP 181
IG V+ P V G IGE +I S + IG V I+ V + E
Sbjct: 268 IGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDS-TIGDGVTITNSV----IEE------ 316
Query: 182 TIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIG------KSTKIIDRNT--GEITY 230
+ + DN +G + +R GSV+G V IG KST I T +TY
Sbjct: 317 SKVGDNVTVGPFAH------LRPGSVIGEEVKIGNFVEIKKST--IGEGTKVSHLTY 365
>gnl|CDD|130240 TIGR01172, cysE, serine O-acetyltransferase. Cysteine
biosynthesis.
Length = 162
Score = 37.3 bits (87), Expect = 0.004
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 137 GAYIGEGSMID--TWSTVGSCAQIGKNVHISGGVGIGGV-LEPIQTGPTIIEDNCFIGAR 193
GA IG G ID T +G A IG +V I GV +GG E + PT + + IGA
Sbjct: 67 GARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPT-VGEGVMIGAG 125
Query: 194 SEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVV 240
++++ + E + +G + K +VP + VV
Sbjct: 126 AKVLGNIEVGENAKIGANSVVLK---------------DVPPGATVV 157
>gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase.
Length = 294
Score = 37.3 bits (86), Expect = 0.005
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 134 VNMGAYIGEGSMID--TWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIG 191
++ A IG+G + D T +G A IG NV I V +GG + I D IG
Sbjct: 163 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIG 222
Query: 192 ARSEIVEGCIIREGSVLGMG 211
A + I+ I EG+ +G G
Sbjct: 223 AGATILGNVKIGEGAKIGAG 242
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 37.2 bits (87), Expect = 0.005
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 41/119 (34%)
Query: 121 AYIGPKAVLMPSFVNMGA---------------YIGEGSMIDTWSTVGSCAQIGKNVHIS 165
YI A + S V G +GEGS++ S + A+IG+NV I
Sbjct: 283 QYIAENAKVKNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVV-KDSVIMPGAKIGENVVI- 340
Query: 166 GGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREG----SVLGMGVFIGKSTKI 220
+ IG + I +G II G +V+G IG T I
Sbjct: 341 --------------------ERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379
Score = 34.8 bits (81), Expect = 0.022
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 111 IIPGTIVRHS-----AYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHIS 165
++ GT V HS +G +V+ S + GA IGE +I+ + +G A IG V I
Sbjct: 301 VVYGT-VEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIER-AIIGENAVIGDGVIIG 358
Query: 166 GG 167
GG
Sbjct: 359 GG 360
Score = 32.1 bits (74), Expect = 0.18
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 189 FIGARSE-----IVEGCIIR---EGSVLGMGVFIGKSTKIID 222
+I ++ +VEGC++ E SVL GV +G+ + + D
Sbjct: 284 YIAENAKVKNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKD 325
>gnl|CDD|177989 PLN02357, PLN02357, serine acetyltransferase.
Length = 360
Score = 36.8 bits (85), Expect = 0.006
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 137 GAYIGEGSMID--TWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARS 194
GA IG+G ++D T +G A +G NV I V +GG + I D IGA +
Sbjct: 232 GAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGT 291
Query: 195 EIVEGCIIREGSVLGMG 211
I+ I EG+ +G G
Sbjct: 292 CILGNITIGEGAKIGAG 308
>gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 481
Score = 36.5 bits (84), Expect = 0.009
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 123 IGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGG--VLEPIQTG 180
+ AV+ P V GA +G GS + ++ + +G+ VHI V + ++ G
Sbjct: 308 LHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAG 367
Query: 181 PTIIEDNCFIGARSEIVEGCII-------REGSVLGMGVFIGKSTKII 221
+ IGA + + G I+ + S +G GVFIG +T +I
Sbjct: 368 HLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLI 415
>gnl|CDD|179994 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 262
Score = 35.1 bits (82), Expect = 0.020
Identities = 33/124 (26%), Positives = 42/124 (33%), Gaps = 32/124 (25%)
Query: 120 SAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQT 179
A I P A++ P GA IGE I + +G IG I V I
Sbjct: 2 MAKIHPTAIVEP-----GAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVI--------D 48
Query: 180 GPTIIEDNCFI----------------GARSEIV--EGCIIREGSVLGMGVFIGKS-TKI 220
G T I N I G + +V + IRE + G G T+I
Sbjct: 49 GHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRI 108
Query: 221 IDRN 224
D N
Sbjct: 109 GDNN 112
Score = 32.0 bits (74), Expect = 0.20
Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 38/120 (31%)
Query: 120 SAYIGPKAVLMPSFVNMGAY--------IGEGSMIDTWSTVGSCAQIGKNVHISGGVGIG 171
+A + P A + + V +G + IG+G++I + + IGKN I IG
Sbjct: 8 TAIVEPGAKIGEN-VEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIG 66
Query: 172 GV---L----EPIQT----------------------GPTIIEDNCFIGARSEIVEGCII 202
L EP + G T I DN + A + C++
Sbjct: 67 EDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVV 126
>gnl|CDD|130911 TIGR01852, lipid_A_lpxA,
acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase. This model describes LpxA, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species, but this
protein represents the first step (from
UDP-N-acetyl-D-glucosamine) and appears to be conserved
in function. Proteins from this family contain many
copies of the bacterial transferase hexapeptide repeat
(pfam00132).
Length = 254
Score = 34.9 bits (81), Expect = 0.022
Identities = 31/120 (25%), Positives = 42/120 (35%), Gaps = 31/120 (25%)
Query: 123 IGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPT 182
I P A++ P GA IGE I + VG +IG V + V I G T
Sbjct: 1 IHPTAIIEP-----GAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVI--------LGHT 47
Query: 183 IIEDNC----------------FIGARSEIVEG--CIIREGSVLGMGVFIGKSTKIIDRN 224
I + + G R+E++ G IRE + G G I N
Sbjct: 48 TIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN 107
Score = 31.8 bits (73), Expect = 0.21
Identities = 41/165 (24%), Positives = 56/165 (33%), Gaps = 36/165 (21%)
Query: 73 INPTKIISDGNGYSTWWDKIPAKFDDWKTKDFEKHNFRIIPGTIVRHSAYIGPKAVLMPS 132
I+PT II G A+ + N I P IV IG L
Sbjct: 1 IHPTAIIEPG-----------AEIGE---------NVEIGPFCIVGPGVKIGDGVELKSH 40
Query: 133 FVNMGA-YIGEGSMIDTWSTVGSCAQ------------IGKNVHISGGVGI-GGVLEPIQ 178
V +G IGEG+ I + +G Q IG N I V I G
Sbjct: 41 VVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGG- 99
Query: 179 TGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDR 223
G T I +N + A S I C++ +L + ++ D
Sbjct: 100 -GVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDY 143
Score = 29.1 bits (66), Expect = 1.4
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 25/114 (21%)
Query: 140 IGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEG 199
IG +++ +S + +G +V ++ + G +E + D IG + +
Sbjct: 104 IGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVE--------VGDYAIIGGLVAVHQF 155
Query: 200 CIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVV--VPGSYPSINLKG 251
I +++G + K +VP Y +V +N+ G
Sbjct: 156 VRIGRYAMIGGLSAVSK---------------DVPPYGLVEGNRARLRGLNIVG 194
>gnl|CDD|172831 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 34.3 bits (79), Expect = 0.037
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 111 IIPGTIVRHSAYIGPKAVLMPSFVNMG------------AYIGEGSMIDTWSTVGSCAQI 158
++ ++V IGP A L P +GEGS + +G A I
Sbjct: 317 VLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGD-ATI 375
Query: 159 GKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGK 216
G+NV+I G I + ++ T+IED+ F+G+ + V + S++ G + K
Sbjct: 376 GRNVNIGCGT-ITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTK 432
Score = 30.9 bits (70), Expect = 0.42
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 142 EGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCI 201
E + ID +G I V ISG IG E ++ C IG + G +
Sbjct: 261 ETTYIDRGVVIGRDTTIYPGVCISGDTRIG---EGCTIEQGVVIKGCRIGDDVTVKAGSV 317
Query: 202 IREGSVLGMGVFIG 215
+ E SV+G V IG
Sbjct: 318 L-EDSVVGDDVAIG 330
Score = 27.0 bits (60), Expect = 5.6
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 177 IQTGP-TIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPS 235
+ G T I I + I EGC I +G V+ K +I D T + G V
Sbjct: 269 VVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVI-------KGCRIGDDVT--VKAGSVLE 319
Query: 236 YSVV 239
SVV
Sbjct: 320 DSVV 323
>gnl|CDD|178091 PLN02472, PLN02472, uncharacterized protein.
Length = 246
Score = 34.2 bits (78), Expect = 0.039
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 24/149 (16%)
Query: 104 FEKHNFRIIP----GTIVRHSAYIGPKAVLMPSF-VNMGAYIGEGSMID---TWSTVGSC 155
+ +IIP V AY+ P VL V GA + G+++ TVG C
Sbjct: 45 DYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFC 104
Query: 156 AQIGKN--VHISGGVGIGGVLEPI-----QTGP------TIIEDNCFIGARSEIVEGCII 202
+ + + +H + G E + G IE C IG S ++EG ++
Sbjct: 105 SNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLV 164
Query: 203 REGSVLGMGVFIGKSTKIIDRNTGEITYG 231
S+L G + +I TGE+ G
Sbjct: 165 ETHSILEAGSVLPPGRRI---PTGELWAG 190
>gnl|CDD|172832 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 33.5 bits (77), Expect = 0.060
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 107 HNFRIIPGTIVRHSAYIGPKAVLMP-----------SFVNMG-AYIGEGSMIDTWSTVGS 154
H+F + G V +GP A L P +FV M A +G+G+ + + +G
Sbjct: 314 HSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGD 373
Query: 155 CAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFI 214
A+IG +I G I + + T+I + FIG+ + +V I +G+++G G I
Sbjct: 374 -AEIGAGANIGAGT-ITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVI 431
Query: 215 GK 216
K
Sbjct: 432 TK 433
Score = 29.3 bits (66), Expect = 1.3
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 29/119 (24%)
Query: 114 GTIVR--HSAYIGPKAVLMPSFVNMG-------AYIGEGSMIDT--W---STVGSCAQIG 159
G ++ S IGP+A + P G + I G++I + W + V S A I
Sbjct: 255 GVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIH 314
Query: 160 KNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKST 218
H+ G + D C +G + + G ++ EG+ +G V + K+
Sbjct: 315 SFSHLEG---------------AEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAV 358
>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY.
Members of this family are located next to other genes
organized into apparent operons for phenylacetic acid
degradation. PaaY is located near the end of these gene
clusters and often next to PaaX, a transcriptional
regulator.
Length = 192
Score = 33.3 bits (76), Expect = 0.073
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 116 IVRHSAYIGPKAVLMPS-FVNMGAYIGEGSMIDTWSTVGSCAQI----GKNVHISGGVGI 170
+V AY+ P AVL+ + Y+G + S G +I G N+ +
Sbjct: 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLA-----SLRGDFGRIVLKEGANIQDNC---- 60
Query: 171 GGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGM 210
V+ T++E+N +G I+ GCI+ +++GM
Sbjct: 61 --VMHGFPGQDTVVEENGHVG-HGAILHGCIVGRNALVGM 97
Score = 27.2 bits (60), Expect = 4.6
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 111 IIPGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGI 170
I+ G IV +A +G AV+M GA IGE S+ V + A + + +
Sbjct: 83 ILHGCIVGRNALVGMNAVVMD-----GAVIGENSI------VAASAFVKAGAEMPAQYLV 131
Query: 171 GGV 173
G
Sbjct: 132 VGS 134
>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.
Length = 196
Score = 32.1 bits (73), Expect = 0.18
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 27/113 (23%)
Query: 111 IIPGTIVRHSAYIGPKAVLMPS-FVNMGAYIGE--------GSMIDTWSTVGSCAQIGKN 161
+IP +V +A++ P AVL+ V G YIG G +I Q G N
Sbjct: 9 LIP--VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLI---------VQAGAN 57
Query: 162 VHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFI 214
+ G ++ TI+ +N IG I+ GC+I +++GM I
Sbjct: 58 LQD------GCIMHGYCDTDTIVGENGHIG-HGAILHGCVIGRDALVGMNSVI 103
>gnl|CDD|162696 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is also
called ADP-glucose pyrophosphorylase. The plant form is
an alpha2,beta2 heterodimer, allosterically regulated in
plants. Both subunits are homologous and included in
this model. In bacteria, both homomeric forms of GlgC
and more active heterodimers of GlgC and GlgD have been
described. This model describes the GlgC subunit only.
This enzyme appears in variants of glycogen synthesis
pathways that use ADP-glucose, rather than UDP-glucose
as in animals.
Length = 361
Score = 31.8 bits (73), Expect = 0.20
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 175 EPIQTGPTII--EDNCFIGARSEIVEGCIIR----EGSVLGMGVFIGKSTKIID 222
P D + S + EGCII SVLG+ V IG + + D
Sbjct: 276 YNEFLPPAKFVDSDAQVVD--SLVSEGCIISGATVSHSVLGIRVRIGSGSTVED 327
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 31.4 bits (72), Expect = 0.30
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 36/127 (28%)
Query: 107 HNFRIIPGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTW-----STVGSCAQ---- 157
H F + G V A +GP A L P GA +GEG+ + + + +G A+
Sbjct: 296 HAFSHLEGAHVGEGAEVGPYARLRP-----GAELGEGAKVGNFVEVKNAKLGEGAKVNHL 350
Query: 158 --IGKNVHISGGVGIG---------GVLEPIQTGPTIIEDNCFIGARSEIV------EGC 200
IG + I G IG G + T I FIG+ S +V +G
Sbjct: 351 TYIG-DATIGAGANIGAGTITCNYDGFNK----HRTEIGAGAFIGSNSALVAPVTIGDGA 405
Query: 201 IIREGSV 207
I GSV
Sbjct: 406 YIASGSV 412
>gnl|CDD|132575 TIGR03536, DapD_gpp, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-succinyltransferase.
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
N-succinyltransferase (DapD) is involved in the
succinylated branch of the "lysine biosynthesis via
diaminopimelate (DAP)" pathway (GenProp0125). This model
represents a clade of DapD sequences most closely
related to the actinobacterial DapD family represented
by the TIGR03535 model. All of the genes evaluated for
the seed of this model are found in genomes where the
downstream desuccinylase is present, but known DapD
genes are absent. Additionally, many of the genes
identified by this model are found proximal to genes
involved in this lysine biosynthesis pathway.
Length = 341
Score = 31.3 bits (71), Expect = 0.31
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 28/121 (23%)
Query: 122 YIGPKAVLMP--SFVNMGAYIGEG------------------SMIDTWSTVGSCAQIGKN 161
Y+ PK V + + V +GAY+GEG SM++ + G +GK
Sbjct: 173 YVVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAG--VMVGKG 230
Query: 162 VHISGGVGIGGVLEPIQTGPTIIE--DNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTK 219
+ GG G L G +I + C +GA + I G + + + G++I TK
Sbjct: 231 SDLGGGCSTMGTLS--GGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTK 286
Query: 220 I 220
+
Sbjct: 287 V 287
>gnl|CDD|137467 PRK09677, PRK09677, putative lipopolysaccharide biosynthesis
O-acetyl transferase WbbJ; Provisional.
Length = 192
Score = 30.6 bits (69), Expect = 0.46
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 176 PIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKS 217
+++ +I +IG I+ G I G ++G + KS
Sbjct: 125 TLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS 166
>gnl|CDD|177933 PLN02296, PLN02296, carbonate dehydratase.
Length = 269
Score = 30.5 bits (69), Expect = 0.53
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 32/139 (23%)
Query: 116 IVRHSAYIGPKAVLMPSFVNMGAYIGEGSMI--------DTWS-TVGSCAQIGKN--VHI 164
+V A++ P A ++ +G GS I D S +VGS I N VH+
Sbjct: 54 VVDKDAFVAPSASVIGD-----VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHV 108
Query: 165 SGGVGIGGVLEPIQTGPTI------------IEDNCFIGARSEIVEGCIIREGSVLGMGV 212
+ G + P G + +ED F+G + +++G ++ + +++ G
Sbjct: 109 -AKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGA 167
Query: 213 FIGKSTKIIDRNTGEITYG 231
+ ++T+I +GE+ G
Sbjct: 168 LVRQNTRI---PSGEVWAG 183
>gnl|CDD|162250 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase,
long form. Alternate name: dTDP-D-glucose synthase.
Length = 353
Score = 30.1 bits (68), Expect = 0.64
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 27/88 (30%)
Query: 140 IGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIVEG 199
+GEG+ I S + A IG++ I +N +IG + I EG
Sbjct: 257 VGEGAKI-VNSVIRGPAVIGEDCII---------------------ENSYIGPYTSIGEG 294
Query: 200 CIIREGS-----VLGMGVFIGKSTKIID 222
+IR+ VL V G +I+D
Sbjct: 295 VVIRDAEVEHSIVLDESVIEGVQARIVD 322
>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 450
Score = 28.7 bits (65), Expect = 1.8
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 28/108 (25%)
Query: 111 IIPGTIVRHSAYIGPKAVLMPSFVNMGAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGI 170
I P T +R + IG G IG GS+I+ +QIG+NV + V
Sbjct: 271 IEPQTHLRGNTVIGS-----------GCRIGPGSLIEN-------SQIGENVTVLYSV-- 310
Query: 171 GGVLEPIQTGPTIIEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKST 218
V + + I D IG + + I +G V I KS
Sbjct: 311 --VSD------SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQ 350
Score = 28.0 bits (63), Expect = 3.3
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 123 IGPKAVLMP-----------SFVNM-GAYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGI 170
IGP A L P +FV + + +GEGS ++ S +G A +G+ V+I G I
Sbjct: 322 IGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGD-ATLGEQVNIGAGT-I 379
Query: 171 GGVLEPIQTGPTIIEDNCFIGARSEIV 197
+ ++ T+I D GA S +V
Sbjct: 380 TANYDGVKKHRTVIGDRSKTGANSVLV 406
>gnl|CDD|183148 PRK11466, PRK11466, hybrid sensory histidine kinase TorS;
Provisional.
Length = 914
Score = 28.3 bits (63), Expect = 2.5
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 26 IPQDVKDAVQSTLDLLDRGIIRIASRDDNGHWNTHQWI 63
I Q + + + + L D G I + SR D W +
Sbjct: 562 IRQVITNLLSNALRFTDEGSIVLRSRTDGEQW----LV 595
>gnl|CDD|151067 pfam10510, PIG-S, Phosphatidylinositol-glycan biosynthesis class S
protein. PIG-S is one of several key, core, components
of the glycosylphosphatidylinositol (GPI) trans-amidase
complex that mediates GPI anchoring in the endoplasmic
reticulum. Anchoring occurs when a protein's C-terminal
GPI attachment signal peptide is replaced with a
pre-assembled GPI. Mammalian GPITransamidase consists of
at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and
PIG-U, all five of which are required for function. It
is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a
tightly associated core that is only weakly associated
with PIG-U. The exact function of PIG-S is unclear.
Length = 500
Score = 27.3 bits (61), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 25 SIPQDVKDAVQSTLDLLDRGIIRIASRDDNGHWN 58
SIP +V D V+ L+ L+R +R+ + NG N
Sbjct: 406 SIPDEVADQVKRALEALER-AVRLLN---NGRLN 435
>gnl|CDD|181930 PRK09527, lacA, galactoside O-acetyltransferase; Reviewed.
Length = 203
Score = 27.3 bits (60), Expect = 5.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 158 IGKNVHISGGVGIGGVLEPIQ----------TGPTIIEDNCFIGARSEIVEGCIIREGSV 207
IG NV I+ V + P+ + P I +N +IG+ I G I + SV
Sbjct: 98 IGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSV 157
Query: 208 LGMGVFIGK 216
+G G + K
Sbjct: 158 IGAGSVVTK 166
>gnl|CDD|177884 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase.
Length = 436
Score = 27.1 bits (61), Expect = 5.2
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 140 IGEGSMID----TWSTVGSCAQIGKNVHISGGVGIGG-VLEPIQTGPTIIEDNCF---IG 191
I G + S VG ++IG+ V I V +G E + +++ + IG
Sbjct: 318 ISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIG 377
Query: 192 ARSEIVEGCIIREGSVLGMGVFI 214
+ + II + + +G V I
Sbjct: 378 ENT-KIRNAIIDKNARIGKNVVI 399
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.137 0.414
Gapped
Lambda K H
0.267 0.0844 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,691,023
Number of extensions: 303169
Number of successful extensions: 768
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 81
Length of query: 285
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 193
Effective length of database: 4,006,537
Effective search space: 773261641
Effective search space used: 773261641
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.5 bits)