HHsearch alignment for GI: 254780782 and conserved domain: COG1363
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism].
Probab=99.73 E-value=4e-15 Score=111.90 Aligned_cols=323 Identities=18% Similarity=0.220 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEEECC-CC-CEEEEECCCCCCCCCC
Q ss_conf 789999999964999789968999999999997798489997058887624899999879-99-8899973368157888
Q gi|254780782|r 3 PDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGT-EA-PHLMFAGHIDVVPPGD 80 (389)
Q Consensus 3 ~e~v~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~g~-~~-~~ill~~H~Dtvp~~~ 80 (389)
T Consensus 2 ~~~~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~~ev~~--------D~lGnlia~~~g~~g~~~imi~AHmDEiG~-- 71 (355)
T COG1363 2 EELLELLKELLEAPGPSGYEEEVRDVLKEELEPLGDEVEV--------DRLGNLIAKKGGKNGPPKVMIAAHMDEIGF-- 71 (355)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEE--------CCCCCEEEEECCCCCCCCEEEEEECCEEEE--
T ss_conf 6799999999739899984799999999999870874488--------678738999168899832789860451103--
Q ss_pred HHHCCCCCCCE--EEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC-CEEEEEEEEC-CCEECCCC--CCCCCCCC
Q ss_conf 77725666422--4521332365443332012454410000000113578-3499975202-20110442--11111000
Q gi|254780782|r 81 FNHWTYPPFSA--TIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKNFG-SISLLITGDE-EGPAINGT--KKMLSWIE 154 (389)
Q Consensus 81 ~~~W~~~Pf~~--~~~~g~l~GrG~~D~Kg~ia~~l~a~~~l~~~~~~~~-~i~~~~~~dE-E~~~~~G~--~~l~~~~~ 154 (389)
T Consensus 72 ---------mV~~I~~~G~Lr~~----~iGG~~~~~~-----------~gq~v~i-~t~~g~~i~GvIg~~p~H~~~~~~ 126 (355)
T COG1363 72 ---------MVKEIEDDGFLRFV----PIGGWDPQVL-----------EGQRVTI-HTDKGKKIRGVIGSKPPHLLKEEA 126 (355)
T ss_pred ---------EEEEECCCCEEEEE----ECCCCCHHHC-----------CCCEEEE-EECCCCEEEEEECCCCCCCCCCCC
T ss_conf ---------78898789659999----7179674340-----------5767999-948986875166166750157300
Q ss_pred CCC--CCCCEEEECCCCCCCC--CCEEEEEEEEEEEEEEEEEEEECCCCHHHHCC-CCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 133--2120354145665434--31001232223579999996412310000001-201345544320112233445664
Q gi|254780782|r 155 KKG--EKWDACIVGEPTCNHI--IGDTIKIGRRGSLSGEITIHGKQGHVAYPHLT-ENPIRGLIPLLHQLTNIGFDTGNT 229 (389)
Q Consensus 155 ~~~--~~~d~~i~~ep~~~~~--~~~~i~~g~rG~~~~~i~v~G~~~Hs~~p~~g-~nAi~~~~~~i~~l~~~~~~~~~~ 229 (389)
T Consensus 127 ~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~l~~-~~v~skalDdR~gva~lle~lk~l~--~~~~~~~ 203 (355)
T COG1363 127 ERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRELAN-GRVVSKALDDRAGVAALLELLKELK--GIELPAD 203 (355)
T ss_pred CCCCCCCHHHEEEECCCCCHHHHHHCCCCCCCEEEECCCEEEECC-CCEEEEECCCHHHHHHHHHHHHHHC--CCCCCCE
T ss_conf 346788533189977859999999549899988997686089369-8187122540675999999999850--6789952
Q ss_pred CCCCEEEEEEEEE--EC----CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 4210146676554--20----46665543211665134342067799999999998765324203431123222663112
Q gi|254780782|r 230 TFSPTNMEITTID--VG----NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPV 303 (389)
Q Consensus 230 ~~~~~~~~i~~i~--~g----~~~~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~i~~~~~~~p~ 303 (389)
T Consensus 204 -----vy~v~tvqEEVGlrGA~~~a~~i~pd~aiavd~~~~~d-~~~~-~---~~----~~~--lg~Gp~i~~~D~~~~~ 267 (355)
T COG1363 204 -----VYFVASVQEEVGLRGAKTSAFRIKPDIAIAVDVTPAGD-TPGV-P---KG----DVK--LGKGPVIRVKDASGIY 267 (355)
T ss_pred -----EEEEEECCHHHCCCHHHCCCCCCCCCEEEEEECCCCCC-CCCC-C---CC----CCC--CCCCCEEEEECCCCCC
T ss_conf -----99999631210562132263326986799973454567-8887-6---55----555--5898779997699888
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECC-CCCHHHHH---HHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHH
Q ss_conf 578678999999999999828995797414-54358898---60598999900478736878404799999999999999
Q gi|254780782|r 304 FLTHDRKLTSLLSKSIYNTTGNIPLLSTSG-GTSDARFI---KDYCPVIEFGLVGRTMHALNENASLQDLEDLTCIYENF 379 (389)
Q Consensus 304 ~~~~~~~l~~~l~~a~~~~~g~~~~~~~~g-g~~d~~~~---~~~iP~v~fGp~~~~~H~pdE~i~i~~l~~~~~~~~~~ 379 (389)
T Consensus 268 ----~~~l~~~L~~~A~~-~~Ip~Q~~v~~~ggTDA~a~~~~g~gvpta~Igip~ry~Hs~~e~~~~~D~~~~~~Ll~~~ 342 (355)
T COG1363 268 ----HPKLRKFLLELAEK-NNIPYQVDVSPGGGTDAGAAHLTGGGVPTALIGIPTRYIHSPVEVAHLDDLEATVKLLVAY 342 (355)
T ss_pred ----CHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHH
T ss_conf ----98999999999998-5997699945788753899987279971688742503445851565499999999999999
Q ss_pred HHHHC
Q ss_conf 99872
Q gi|254780782|r 380 LQNWF 384 (389)
Q Consensus 380 i~~~~ 384 (389)
T Consensus 343 i~~~~ 347 (355)
T COG1363 343 LESLD 347 (355)
T ss_pred HHHCC
T ss_conf 97345