RPSBLAST alignment for GI: 254780782 and conserved domain: TIGR01246

>gnl|CDD|162269 TIGR01246, dapE_proteo, succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason. Length = 370
 Score =  431 bits (1109), Expect = e-121
 Identities = 175/379 (46%), Positives = 229/379 (60%), Gaps = 13/379 (3%)

Query: 6   LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAP 65
            E   +LI  PSVTP D G   I+   L+ LGF IE   F        KNL+A  GT  P
Sbjct: 2   TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGD-----TKNLWATRGTGEP 56

Query: 66  HLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYK 125
            L FAGH DVVP G    W+ PPF     +GK+YGRG  DMKGS+A FI A  RF+ K  
Sbjct: 57  VLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNP 116

Query: 126 NF-GSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
           +  GSISLLIT DEEG AI+GTKK++  +  + E  D CIVGEP+    +GD IK GRRG
Sbjct: 117 DHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRG 176

Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
           S++G +TI G QGHVAYPHL  NPI    P L +LT I +D GN  F PT+++IT I  G
Sbjct: 177 SITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFPPTSLQITNIHAG 236

Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVF 304
             + NVIP ++ + FN+RF+   +++ LK+ + +     I +   L + + +S    P F
Sbjct: 237 TGANNVIPGELYVQFNLRFSTEVSDEILKQRVEA-----ILDQHGLDYDLEWSLSGEP-F 290

Query: 305 LTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVGRTMHALNEN 363
           LT+D KL     ++I  T G  P LST GGTSD RFI      V+EFG V  T+H +NE 
Sbjct: 291 LTNDGKLIDKAREAIEETNGIKPELSTGGGTSDGRFIALMGAEVVEFGPVNATIHKVNEC 350

Query: 364 ASLQDLEDLTCIYENFLQN 382
            S++DLE L+ +Y++ L+N
Sbjct: 351 VSIEDLEKLSDVYQDLLEN 369