RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate
desuccinylase [Candidatus Liberibacter asiaticus str. psy62]
(389 letters)
>gnl|CDD|30969 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate
desuccinylase and related deacylases [Amino acid
transport and metabolism].
Length = 409
Score = 281 bits (720), Expect = 2e-76
Identities = 125/397 (31%), Positives = 176/397 (44%), Gaps = 19/397 (4%)
Query: 3 PDCLEHLIQLIKCPSVTPQ-DGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFG 61
D LE L +L++ PSV+ + A +L L+ LGF +EE + NL AR G
Sbjct: 13 DDILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEEDEVGPGPG--RPNLVARLG 70
Query: 62 TE--APHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVAR 119
P L+ GH+DVVP G WT PF TI +GK+YGRG DMKG +A + A++
Sbjct: 71 GGDGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSA 130
Query: 120 FIPKYKNF-GSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTI 178
G + LL T DEE G + E G + D IVGEPT GD I
Sbjct: 131 LKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEPTLESEGGDII 190
Query: 179 KIGRRGSLSGEITIHGKQGHVAY--PHLTENPIRGLIPLLHQLTNIGFDTGNTTF-SPTN 235
+G +GSL E+T+ GK GH + P L NPI I L +L D F P
Sbjct: 191 VVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGFDGPLG 250
Query: 236 MEITTIDVGNPS-------KNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVP 288
+ + I G + NVIP + + + +IR + + EE+ ++ I
Sbjct: 251 LNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELE-AELRAIAPKE 309
Query: 289 KLSHTVHFSSPVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYC-PV 347
+ + + P+ + D L + L+++ G P +ST GGT DARF P
Sbjct: 310 GVEYEIEPGLGEPPLPVPGDSPLVAALAEAAEELLGLPPEVSTGGGTHDARFFARLGIPA 369
Query: 348 IEFGLVG-RTMHALNENASLQDLEDLTCIYENFLQNW 383
+ FG H NE L+DL + L
Sbjct: 370 VIFGPGDIGLAHQPNEYVELEDLVKGAKVLARLLYEL 406
>gnl|CDD|144950 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40. This
family includes a range of zinc metallopeptidases
belonging to several families in the peptidase
classification. Family M20 are Glutamate
carboxypeptidases. Peptidase family M25 contains X-His
dipeptidases.
Length = 310
Score = 209 bits (534), Expect = 8e-55
Identities = 92/319 (28%), Positives = 128/319 (40%), Gaps = 13/319 (4%)
Query: 68 MFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKNF 127
+ GH+DVVP G+ WT+PPFS TI +GK+YGRG DMKG + + A+ K
Sbjct: 1 LLRGHMDVVPIGE-TGWTHPPFSWTIEDGKMYGRGHDDMKGGLLAALEALRALKAGGKLK 59
Query: 128 GSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRGSLS 187
G++ LL DEEG G + ++ G D +VGEPT G RGSL
Sbjct: 60 GTVKLLFQPDEEGGGFEGARALIEDGAIFGLHPDQGVVGEPTGLPGG-----TGIRGSLW 114
Query: 188 GEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVGNPS 247
+T+ G GH P N I L L + G P + I T+ G S
Sbjct: 115 LFLTVIGGAGHHGSPPHGGNAIALAAAALILLLQLIVSRGVDPLDPAVVGIGTVGGGGGS 174
Query: 248 KNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVFLTH 307
N + + R + L EE + G + + P +
Sbjct: 175 NNNVIPEAAFLRGRRRTLDEELRALVEEEEEAIAAGAAAAGVVEEEEDYRPPYPVTV--N 232
Query: 308 DRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY---CPVIEFGLV-GRTMHALNEN 363
D L + L ++ G P SGG DA F + P++ FG G H+ NE
Sbjct: 233 DPALVAALEEAA-KELGLGPEPEPSGGGEDAAFFAEVGLGIPMLGFGPGDGALAHSPNEY 291
Query: 364 ASLQDLEDLTCIYENFLQN 382
L DLE + L+
Sbjct: 292 VDLDDLEKGAKVLARLLEE 310
>gnl|CDD|37486 KOG2275, KOG2275, KOG2275, Aminoacylase ACY1 and related
metalloexopeptidases [Amino acid transport and
metabolism].
Length = 420
Score = 111 bits (279), Expect = 4e-25
Identities = 79/335 (23%), Positives = 130/335 (38%), Gaps = 20/335 (5%)
Query: 63 EAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAE-GKIYGRGIVDMKGSIACFIAAVAR-F 120
E P ++ H DVVP WT+PPFSA E G IY RG DMK ++ A+
Sbjct: 87 ELPSILLNSHTDVVPV-FREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLK 145
Query: 121 IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180
+K +I L DEE G K+ E K I+ E T+
Sbjct: 146 ASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFKKL-NLGFILDEGGATENDFATVFY 204
Query: 181 GRRGSLSGEITIHGKQGHVAY--PHLTENPIRGLIPLLHQLTNIGFD-----TGNTTFSP 233
+G ++T +G GH +Y P+ + L+ L + D
Sbjct: 205 AEKGPWWLKVTANGTPGHSSYPPPNTAIEKLEKLVESLEEFREKQVDLLASGPKLALGDV 264
Query: 234 TNMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHT 293
T + + I+ G S NV+P + +F+IR + K +++++ + L +
Sbjct: 265 TTINVGIINGGVQS-NVLPETFEAAFDIRVRPHVDVKAIRDQLEDEWAEEAGEGVTLEFS 323
Query: 294 VHFSSPVSPVFLTHDR-KLTSLLSKSIYNTTGNI-PLLSTSGGTSDARFIKD-YCPVIEF 350
PV T D + + ++ + G P + G++D+R I++ P I F
Sbjct: 324 QKVILDYPPVTPTDDSNPFWTAFAGALKDEGGKGYPEI--GPGSTDSRHIRNEGVPAIGF 381
Query: 351 GLVGRT---MHALNENASLQDLEDLTCIYENFLQN 382
+ T +H NE + + IY + N
Sbjct: 382 SPIINTPMLLHDHNEFLNEKVFLRGIEIYYTIIVN 416
>gnl|CDD|31662 COG1473, AbgB, Metal-dependent
amidase/aminoacylase/carboxypeptidase [General function
prediction only].
Length = 392
Score = 64.6 bits (157), Expect = 5e-11
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 31/205 (15%)
Query: 128 GSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIG----DTIKIGRR 183
G++ L+ EEG G K M+ + G V + + + G + +G
Sbjct: 127 GTVRLIFQPAEEGGG--GAKAMI----EDG-------VFDDFVDAVFGLHPGPGLPVGTV 173
Query: 184 GSLSG---------EITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPT 234
G EIT GK GH A PHL + + L+ L I + S
Sbjct: 174 ALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLDSAV 233
Query: 235 NMEITTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTV 294
+ + I+ G + NVIP ++ IR + L+ I R+ KGI +
Sbjct: 234 -VTVGKIEAGTAA-NVIPDSAELEGTIRTFSDEVREKLEARIE-RIAKGIAAAYGAEAEI 290
Query: 295 HFSSPVSPVFLTHDRKLTSLLSKSI 319
+ PV +D LT LL+++
Sbjct: 291 DYERGYPPVV--NDPALTDLLAEAA 313
>gnl|CDD|37487 KOG2276, KOG2276, KOG2276, Metalloexopeptidases [Amino acid
transport and metabolism].
Length = 473
Score = 61.9 bits (150), Expect = 3e-10
Identities = 77/388 (19%), Positives = 135/388 (34%), Gaps = 86/388 (22%)
Query: 67 LMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKN 126
++ GH+DV P + W PF+ T +GK++GRG D KG + +I AV +
Sbjct: 94 VLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGID 153
Query: 127 FGS-ISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGD---TIKIGR 182
+ + G EE + + + +K + D + + N+ +G + G
Sbjct: 154 LPVNVVFVFEGMEESGSEGLDELIEKEKDKFFKDVDFVCISD---NYWLGTKKPCLTYGL 210
Query: 183 RGSLSGEITIHG------------------------------KQGHVAYPH-------LT 205
RG + +I + G QG + P LT
Sbjct: 211 RGVIYFQIEVEGPSKDLHSGVFGGVVHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLT 270
Query: 206 ENPIRGLIPLLHQLTNIGFDTGNTTFSPTN--------------MEITTID---VGNPSK 248
E + + TG+ PT+ + I I+ G +K
Sbjct: 271 EEEDSIYDDIDFDVEEFKEATGSQML-PTDDKKRILMHRWRYPSLSIHGIEGAFSGPGAK 329
Query: 249 NVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIK-----GIQNVPKLS--HTVH--FSSP 299
VIPA+V F+IR + + ++ + L K N K+S H S P
Sbjct: 330 TVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSPNKLKVSMGHAGAPWVSDP 389
Query: 300 VSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGT-SDARFIKDYC--PVIEFGLVGRT 356
P +L L ++I G P + GG+ +D V+ G +
Sbjct: 390 DDPHYL--------ALKRAIETVYGVEPDFTREGGSIPVTLTFQDITGKSVLLLP-YGAS 440
Query: 357 M---HALNENASLQDLEDLTCIYENFLQ 381
H+ NE ++ + + T + ++
Sbjct: 441 DDGAHSQNEKLNITNYVEGTKVLAAYIS 468
>gnl|CDD|33922 COG4187, RocB, Arginine degradation protein (predicted deacylase)
[Amino acid transport and metabolism].
Length = 553
Score = 53.0 bits (127), Expect = 1e-07
Identities = 71/330 (21%), Positives = 116/330 (35%), Gaps = 73/330 (22%)
Query: 9 LIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIV------------KNL 56
+ L+ PSVT G F + L + E + ++ + +N+
Sbjct: 14 TLSLVSWPSVTGTPGEGAF--ADRLL---GVLGELPYFQEHPEDLWLQPIHNDPYGRRNV 68
Query: 57 YA--RFGTEAPHLMFAGHIDVVPP---GDFNHWTYPP---FSATIAEGK----------- 97
+A R GT ++ GH D V G+ + P A I +
Sbjct: 69 FALVRGGTSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLE 128
Query: 98 ----IYGRGIVDMKGSIACFIAAVARFIPKYKNFGSISLLITGDEEG---------PAIN 144
++GRG +DMK +A +A + F + G++ + DEE PA+
Sbjct: 129 SGDWLFGRGALDMKSGLAVHLACLEEFAARTDRQGNLLFMAVPDEEVESRGMREARPALP 188
Query: 145 GTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDT---IKIGRRGSLSGEITIHGKQGHVAY 201
G KK K ++ A I + T + GD + G G L + G + HV Y
Sbjct: 189 GLKK------KFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVGCETHVGY 242
Query: 202 PHLTENP---IRGLIPLLHQLTNIGF---DTGNTTFSPTNMEITTIDVGNPSKNVIPAQV 255
P N + L N G T P+ +E + K Q
Sbjct: 243 PFEGVNANFMASEITRRLE--LNADLADRVDGEITPPPSCLEQKDL------KESYNVQT 294
Query: 256 KMSFNIRFNDLWNEKTLKEEIRSRLIKGIQ 285
+ FN L++ +T K E+ RL + +
Sbjct: 295 PERAWLYFNWLYHSRTAK-ELFDRLKEEAE 323
>gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related
to the GT1 family of glycosyltransferases. The
sucrose-phosphate synthases in this family may be unique
to plants and photosynthetic bacteria. This enzyme
catalyzes the synthesis of sucrose 6-phosphate from
fructose 6-phosphate and uridine 5'-diphosphate-glucose,
a key regulatory step of sucrose metabolism. The
activity of this enzyme is regulated by phosphorylation
and moderated by the concentration of various
metabolites and light..
Length = 398
Score = 28.3 bits (64), Expect = 4.0
Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 69 FAGHIDVVPPG-DFNHWT-YPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYKN 126
+ I VVPPG D +T Y A A I AV R P+ K
Sbjct: 185 YPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPD---------KPRILAVGRLDPR-KG 234
Query: 127 FGSISLLI 134
I LI
Sbjct: 235 ---IDTLI 239
>gnl|CDD|34812 COG5215, KAP95, Karyopherin (importin) beta [Intracellular
trafficking and secretion].
Length = 858
Score = 27.7 bits (61), Expect = 5.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 339 RFIKDYCPVIEFGLVGRTMHALNENASLQDLEDLTCIYE 377
+F++ Y L GR M + N+ ++Q +E + I E
Sbjct: 254 KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICE 292
>gnl|CDD|32229 COG2046, MET3, ATP sulfurylase (sulfate adenylyltransferase)
[Inorganic ion transport and metabolism].
Length = 397
Score = 27.2 bits (60), Expect = 8.7
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 186 LSGEITIHGKQGHVAYPHLTENP--IRGLIPLLHQLTNIGFDTGN 228
L+G+I + + +P P R + T + F T N
Sbjct: 149 LAGKIELINEPIFKPFPKYWLTPAETREVFKEKGWKTVVAFQTRN 193
>gnl|CDD|145332 pfam02119, FlgI, Flagellar P-ring protein.
Length = 342
Score = 27.1 bits (61), Expect = 8.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 29 LVNTLKLLGFSIEEKDFQTKNTSIV 53
L N L+ LG +I + ++KN + V
Sbjct: 42 LANMLERLGVNIPPNNIKSKNVAAV 66
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,897,086
Number of extensions: 260518
Number of successful extensions: 552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 14
Length of query: 389
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 293
Effective length of database: 4,189,273
Effective search space: 1227456989
Effective search space used: 1227456989
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)