RPSBLAST alignment of GI: 254780782 and protein with PDBid: 1vgy

>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis MC58} SCOP: c.56.5.4 d.58.19.1 Length = 393

 Score =  274 bits (701), Expect = 3e-74
 Identities = 165/381 (43%), Positives = 220/381 (57%), Gaps = 13/381 (3%)

Query: 6   LEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARFGTEAP 65
           LE   +LI  PSVTP D     ++   L  +GF+ EE  F        KN++ R GT+AP
Sbjct: 9   LELAKELISRPSVTPDDRDCQKLMAERLHKIGFAAEEMHFGN-----TKNIWLRRGTKAP 63

Query: 66  HLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARFIPKYK 125
            + FAGH DVVP G    W  PPF     +G++YGRG  DMK SIACF+ A  RF+ K+ 
Sbjct: 64  VVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHP 123

Query: 126 NFG-SISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKIGRRG 184
           N   SI+LLIT DEEG A++GT K++  ++ + E  D CIVGEPT    +GD IK GRRG
Sbjct: 124 NHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRG 183

Query: 185 SLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDVG 244
           SLSG +T+ GKQGH+AYPHL  NP+    P L +LT   +D GN  F PT+ +I+ I+ G
Sbjct: 184 SLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGG 243

Query: 245 NPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPVSPVF 304
             + NVIP ++ + FN RF+    E  LK+ + + L K       + + + +S    P F
Sbjct: 244 TGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDK-----HGVQYDLQWSCSGQP-F 297

Query: 305 LTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYC-PVIEFGLVGRTMHALNEN 363
           LT   KLT +   +I  T G    LST+GGTSD RFIK     +IE G    T+H +NEN
Sbjct: 298 LTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAMAQELIELGPSNATIHQINEN 357

Query: 364 ASLQDLEDLTCIYENFLQNWF 384
             L D+  L+ +YE  L    
Sbjct: 358 VRLNDIPKLSAVYEGILVRLL 378