RPSBLAST alignment of GI: 254780782 and protein with PDBid: 3isz

>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2; 2.00A {Haemophilus influenzae rd KW20} PDB: 3ic1_A Length = 377
 Score =  231 bits (589), Expect = 2e-61
 Identities = 155/386 (40%), Positives = 213/386 (55%), Gaps = 13/386 (3%)

Query: 1   MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60
           M    +     LI+ PS++P D G   I+   L+ LGF IE   F         NL+A+ 
Sbjct: 1   MKEKVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFND-----TLNLWAKH 55

Query: 61  GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120
           GT  P + FAGH DVVP GD N W+ PPFSA I +G +YGRG  DMKGS+A  I A   +
Sbjct: 56  GTSEPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEY 115

Query: 121 IPKYKNFG-SISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIK 179
           +    N   +I+LLIT DEE  A +GT  ++  +  + EK   C+VGEP+    +GD +K
Sbjct: 116 VKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDEKITYCMVGEPSSAKNLGDVVK 175

Query: 180 IGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEIT 239
            GRRGS++G + I G QGHVAYPHL ENPI      L +LT   +D GN  F PT+++I 
Sbjct: 176 NGRRGSITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDKGNEFFPPTSLQIA 235

Query: 240 TIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSP 299
            I  G  S NVIPA++ + FN+R+     ++ +K+++   L K       L + + ++  
Sbjct: 236 NIHAGTGSNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK-----HNLKYRIEWNLS 290

Query: 300 VSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVGRTMH 358
             P FLT   KL   ++ +I  T G  P   T GGTSD RFI      V+EFG +  T+H
Sbjct: 291 GKP-FLTKPGKLLDSITSAIEETIGITPKAETGGGTSDGRFIALMGAEVVEFGPLNSTIH 349

Query: 359 ALNENASLQDLEDLTCIYENFLQNWF 384
            +NE  S++DL     IY   L N  
Sbjct: 350 KVNECVSVEDLGKCGEIYHKMLVNLL 375