RPSBLAST alignment of GI: 254780782 and protein with PDBid: 3isz
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2; 2.00A {Haemophilus influenzae rd KW20} PDB: 3ic1_A Length = 377
Score = 231 bits (589), Expect = 2e-61
Identities = 155/386 (40%), Positives = 213/386 (55%), Gaps = 13/386 (3%)
Query: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60
M + LI+ PS++P D G I+ L+ LGF IE F NL+A+
Sbjct: 1 MKEKVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFND-----TLNLWAKH 55
Query: 61 GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120
GT P + FAGH DVVP GD N W+ PPFSA I +G +YGRG DMKGS+A I A +
Sbjct: 56 GTSEPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEY 115
Query: 121 IPKYKNFG-SISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIK 179
+ N +I+LLIT DEE A +GT ++ + + EK C+VGEP+ +GD +K
Sbjct: 116 VKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDEKITYCMVGEPSSAKNLGDVVK 175
Query: 180 IGRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEIT 239
GRRGS++G + I G QGHVAYPHL ENPI L +LT +D GN F PT+++I
Sbjct: 176 NGRRGSITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDKGNEFFPPTSLQIA 235
Query: 240 TIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSP 299
I G S NVIPA++ + FN+R+ ++ +K+++ L K L + + ++
Sbjct: 236 NIHAGTGSNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK-----HNLKYRIEWNLS 290
Query: 300 VSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDY-CPVIEFGLVGRTMH 358
P FLT KL ++ +I T G P T GGTSD RFI V+EFG + T+H
Sbjct: 291 GKP-FLTKPGKLLDSITSAIEETIGITPKAETGGGTSDGRFIALMGAEVVEFGPLNSTIH 349
Query: 359 ALNENASLQDLEDLTCIYENFLQNWF 384
+NE S++DL IY L N
Sbjct: 350 KVNECVSVEDLGKCGEIYHKMLVNLL 375