RPSBLAST alignment of GI: 254780782 and protein with PDBid: 3pfe

>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Length = 472

 Score =  165 bits (417), Expect = 2e-41
 Identities = 61/450 (13%), Positives = 122/450 (27%), Gaps = 72/450 (16%)

Query: 4   DCLEHLIQLIKCPSVTPQDGGAFFI---LVNTLKLLGFSIEEKDFQTKNTSIVK------ 54
           + L  L   IK P+ +P     +     +   +  +    +    +     IV+      
Sbjct: 19  EILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTP 78

Query: 55  NLYARF-GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACF 113
            L+    G     ++  GH+D  P          P+   +  G +YGRG  D   S    
Sbjct: 79  LLFMEIPGQIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYAS 138

Query: 114 IAAVARFIPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHI 173
           + A+     +   +    L+I   EE          +  ++++  K    I  +    + 
Sbjct: 139 LTAIRALEQQGLPYPRCILIIEACEESG-SYDLPFYIELLKERIGKPSLVICLDSGAGNY 197

Query: 174 IGDTIKIGRRGSLSGEITIHGKQGHVAYPH---LTENPIRGLIPLLHQLTNI-------- 222
               +    RG+L G++T+      V       +  +  R    L+ ++ +         
Sbjct: 198 EQLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLP 257

Query: 223 ------------------------------------------GFDTGNTTFSPTNME--I 238
                                                          N T+ P       
Sbjct: 258 QLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGA 317

Query: 239 TTIDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSS 298
                   + NV+     +  ++R   L + +     +   L +      K+   +    
Sbjct: 318 DGFPAIADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKIQNGG 377

Query: 299 PVSPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGT-SDARFIKDYCPVIEFGLVG--- 354
                       L    S++              GGT      + +  P  +F + G   
Sbjct: 378 SKGWNAPLLSDWLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLGEQFPKAQFMITGVLG 437

Query: 355 --RTMHALNENASLQDLEDLTCIYENFLQN 382
                H  NE   L  ++ LT      L +
Sbjct: 438 PHSNAHGPNEFLHLDMVKKLTSCVSYVLYS 467