BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate
desuccinylase [Candidatus Liberibacter asiaticus str. psy62]
(389 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 389
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/389 (100%), Positives = 389/389 (100%)
Query: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60
MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF
Sbjct: 1 MTPDCLEHLIQLIKCPSVTPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNLYARF 60
Query: 61 GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120
GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF
Sbjct: 61 GTEAPHLMFAGHIDVVPPGDFNHWTYPPFSATIAEGKIYGRGIVDMKGSIACFIAAVARF 120
Query: 121 IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180
IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI
Sbjct: 121 IPKYKNFGSISLLITGDEEGPAINGTKKMLSWIEKKGEKWDACIVGEPTCNHIIGDTIKI 180
Query: 181 GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT 240
GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT
Sbjct: 181 GRRGSLSGEITIHGKQGHVAYPHLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTNMEITT 240
Query: 241 IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV 300
IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV
Sbjct: 241 IDVGNPSKNVIPAQVKMSFNIRFNDLWNEKTLKEEIRSRLIKGIQNVPKLSHTVHFSSPV 300
Query: 301 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTMHAL 360
SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTMHAL
Sbjct: 301 SPVFLTHDRKLTSLLSKSIYNTTGNIPLLSTSGGTSDARFIKDYCPVIEFGLVGRTMHAL 360
Query: 361 NENASLQDLEDLTCIYENFLQNWFITPSQ 389
NENASLQDLEDLTCIYENFLQNWFITPSQ
Sbjct: 361 NENASLQDLEDLTCIYENFLQNWFITPSQ 389
>gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 398
Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 213 IPLLHQLTNIGFDTGNTTFSPTNME-ITTIDVGNPSKNVIPA 253
IPL+ +L D GN + + + IT ID+ + ++ ++ A
Sbjct: 353 IPLVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHA 394
>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1386
Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 19 TPQDGGAFFILVNTLKLLGFSIEEKDFQTKNTSIVKNL 56
TP+ +F +LV ++ LG SI+ ++ +TKN++ ++ +
Sbjct: 1343 TPE---SFNVLVKEMQALGLSIDLENSRTKNSAKMEEI 1377
>gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 360
Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 180 IGRRGSLSGEITIHGKQGHVAYP----HLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTN 235
I R + + T QG VA P H T N + LI + ++ + G TF P
Sbjct: 172 IDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVK 231
Query: 236 MEITTIDVGNPSKNVIPAQVKMSFN 260
+E T + + I A + N
Sbjct: 232 VEDTDDHIMHSEIGFIDAPTAQALN 256
>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
str. psy62]
Length = 523
Score = 23.9 bits (50), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 210 RGLIPLLHQLTNIGFDTGNTTFSPTNMEITTIDV 243
+G I L +L GFD + FSP + ++ + +
Sbjct: 103 KGTIELHERLEGDGFDKKHKFFSPVSWQVIVLQI 136
>gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 351
Score = 23.5 bits (49), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 124 YKNFGSISLLITGDEEGPAING 145
Y ++GS+S I D++ AING
Sbjct: 155 YLHYGSVSGNICSDKKATAING 176
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 23.1 bits (48), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 157 GEKWDACIVGEPTCNHIIGDTIKIGRRGSLSGEI 190
G+ C V T NH I IKIG R ++ +I
Sbjct: 78 GKDIPMCGVPVHTANHYIQKLIKIGHRIAICEQI 111
>gi|254780963|ref|YP_003065376.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 215
Score = 23.1 bits (48), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 221 NIGFDTGNTTFSPTNMEITTIDV 243
N+GF+T N +PT M + + V
Sbjct: 76 NLGFETFNEIVNPTTMRVLVLPV 98
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,487
Number of Sequences: 1233
Number of extensions: 12095
Number of successful extensions: 24
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 9
length of query: 389
length of database: 328,796
effective HSP length: 76
effective length of query: 313
effective length of database: 235,088
effective search space: 73582544
effective search space used: 73582544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)