HHsearch alignment for GI: 254780783 and conserved domain: pfam05443
>pfam05443 ROS_MUCR ROS/MUCR transcriptional regulator protein. This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti. This gene encodes a 15.5-kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid and is necessary for succinoglycan production. Sinorhizobium meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of alfalfa nodules. MucR from Sinorhizobium meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan.
Probab=100.00 E-value=0 Score=369.08 Aligned_cols=129 Identities=53% Similarity=0.911 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCHHH
Q ss_conf 86789999999999997368888899999999999999950266666555785458998573651388845974361000
Q gi|254780783|r 9 SSERFLEMTVDIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQPERLKPAVPIRKSIENGCLYCLEDGMQF 88 (149)
Q Consensus 9 ~~~~l~~lta~IV~A~vs~n~v~~~el~~lI~~v~~aL~~l~~~~~~~~~~~~~~~~PAv~i~kSi~~d~iiClecGk~~ 88 (149)
T Consensus 2 ~~~~ll~lta~IV~Ayvs~n~v~~~elp~lI~~v~~aL~~l~~~~~~~~-~~~~~~~Pav~i~kSi~~d~iicledGK~~ 80 (130)
T pfam05443 2 ASSDLLELTADIVSAYVSNNSVPAEELPGLIQSVHAALAGLGAPAAAPA-AEEEKPTPAVPIKKSVTPDYIICLEDGKKF 80 (130)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCHHHCCCCCEEEEEECCCCC
T ss_conf 6027999999999998626999989999999999999997347888988-776678999885344688847871078532
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 25899986743999899999727379883229999999999999819981
Q gi|254780783|r 89 KSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKLAKNMGLGR 138 (149)
Q Consensus 89 K~LkRHL~t~hgLtp~eYR~kwGLp~dyPlvAp~Ys~~Rs~~Ak~~GLg~ 138 (149)
T Consensus 81 K~LkRHL~t~hgLtpeeYR~kwGLp~dyPmvAp~ys~~Rs~~Ak~~gLG~ 130 (130)
T pfam05443 81 KTLKRHLRTHHGLTPEEYRAKWGLPADYPMVAPNYAAARSELAKKIGLGR 130 (130)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 07999987641989999999809798996739899999999999806899