RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780783|ref|YP_003065196.1| transcription regulator
protein [Candidatus Liberibacter asiaticus str. psy62]
         (149 letters)



>d2gmya1 a.152.1.3 (A:2-148) Hypothetical protein Atu0492
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 147

 Score = 27.8 bits (61), Expect = 0.40
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 61  PERLKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVS 120
             R    + +R SI NGC +C+   M  K  +    +   +       +  + ++     
Sbjct: 30  EHRFIHLIKLRASIINGCAFCV--DMHVKESRHDGLSEQWINLMSVWRESPVYTEQERAL 87

Query: 121 REYATTRSKLAKNM 134
             +    +K+A+  
Sbjct: 88  LGWVDAVTKIAETG 101


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 27.3 bits (61), Expect = 0.66
 Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 3/23 (13%)

Query: 81  CLEDGMQFK---SLKRHLKTHHN 100
           C      F+    L  H K +H+
Sbjct: 11  CSHCDKTFRQKQLLDMHFKRYHD 33


>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 121

 Score = 26.7 bits (59), Expect = 0.78
 Identities = 9/35 (25%), Positives = 11/35 (31%)

Query: 78  CLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNL 112
           CL+C       +    H K  H    D    K  L
Sbjct: 18  CLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGL 52


>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence
           genes, SarA {Staphylococcus aureus [TaxId: 1280]}
          Length = 115

 Score = 26.9 bits (59), Expect = 0.87
 Identities = 8/70 (11%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 76  NGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKLAKNMG 135
           N C   L        LK  +K   +++ +E+ +   ++ +     +E       +  ++ 
Sbjct: 6   NDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISEN-----KEKEYYLKDIINHLN 60

Query: 136 LGRGRKKRVL 145
             + +  + +
Sbjct: 61  YKQPQVVKAV 70


>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3
           {Arthrobacter globiformis [TaxId: 1665]}
          Length = 315

 Score = 25.3 bits (54), Expect = 2.5
 Identities = 9/44 (20%), Positives = 15/44 (34%)

Query: 86  MQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSK 129
             F++    LK          R  W+     P+ + E   TR+ 
Sbjct: 29  YWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTA 72


>d2o4da1 a.152.1.3 (A:2-145) Hypothetical protein PA0269
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 144

 Score = 25.1 bits (54), Expect = 2.7
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 61  PERLKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVS 120
              L   V +R S  NGC YC+   M     ++  +T   +       +    +     +
Sbjct: 30  ERPLIELVYLRTSQINGCAYCV--NMHANDARKAGETEQRLQALCVWQETPYFTPRERAA 87

Query: 121 REYATTRSKLAKNM 134
             +    ++L++  
Sbjct: 88  LAWTEQLARLSQGA 101


>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
           (Gallus gallus) [TaxId: 9031]}
          Length = 123

 Score = 24.3 bits (52), Expect = 4.4
 Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 89  KSLKRHLKTHHNMTPDEYRIKW-NLASDYPM 118
           K +++  +   N+  +E  +K+  + S    
Sbjct: 92  KLIQQTFRQFANLNREESILKFFEILSPVYR 122


>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 346

 Score = 24.3 bits (52), Expect = 4.7
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 11/127 (8%)

Query: 25  VSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQP--ERLKPAVPIRKSIENGCLYCL 82
                      GS       AL        C  + +            R     G   CL
Sbjct: 141 FDQFFGEGCAPGSQRNSSLCAL--------CIGSERAPGRECLANNHERYYGYTGAFRCL 192

Query: 83  EDGMQFKSLKRH-LKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKLAKNMGLGRGRK 141
            +      +K   ++ + +    +   K     D+ ++ +  A      A+N  L R   
Sbjct: 193 VEKGDVAFVKDQVVQQNTDGKNKDDWAKDLKQMDFELLCQNGAREPVDNAENCHLARAPN 252

Query: 142 KRVLTSK 148
             V+   
Sbjct: 253 HAVVARD 259


>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
           [TaxId: 562]}
          Length = 271

 Score = 24.1 bits (51), Expect = 4.8
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 57  DNVQPERLKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDY 116
           D+     +K A  I  +   G    L  G  +  +  +LK  H   P +Y I +N A   
Sbjct: 19  DHTISPAVKNA--IAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQ 76

Query: 117 PMVSREY 123
                  
Sbjct: 77  KAADGST 83


>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
          protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 38

 Score = 24.4 bits (53), Expect = 4.9
 Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 3/21 (14%)

Query: 81 CLEDGMQFK---SLKRHLKTH 98
          C E G  F     L +H +TH
Sbjct: 15 CDECGKSFSHSSDLSKHRRTH 35


>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 53

 Score = 24.3 bits (52), Expect = 5.2
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 3/32 (9%)

Query: 70 IRKSIENGCLYCLEDGMQFK---SLKRHLKTH 98
          +   +      C   G +FK    L  H+K H
Sbjct: 22 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53


>d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId:
           1422]}
          Length = 119

 Score = 23.9 bits (52), Expect = 6.2
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query: 116 YPMVSREYATTRSKLAKNM 134
           YP ++++Y TT S++ + +
Sbjct: 51  YPDIAKKYNTTASRVERAI 69


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 37

 Score = 23.5 bits (51), Expect = 7.3
 Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 3/24 (12%)

Query: 81  CLEDGMQFK---SLKRHLKTHHNM 101
           C +    F     L  H K H  +
Sbjct: 14  CPDCDRSFSRSDHLALHRKRHMLV 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,015
Number of extensions: 22697
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 20
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)