BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780783|ref|YP_003065196.1| transcription regulator
protein [Candidatus Liberibacter asiaticus str. psy62]
         (149 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780783|ref|YP_003065196.1| transcription regulator protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 149

 Score =  313 bits (802), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MDDDASFDSSERFLEMTVDIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQ 60
           MDDDASFDSSERFLEMTVDIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQ
Sbjct: 1   MDDDASFDSSERFLEMTVDIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQ 60

Query: 61  PERLKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVS 120
           PERLKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVS
Sbjct: 61  PERLKPAVPIRKSIENGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVS 120

Query: 121 REYATTRSKLAKNMGLGRGRKKRVLTSKV 149
           REYATTRSKLAKNMGLGRGRKKRVLTSKV
Sbjct: 121 REYATTRSKLAKNMGLGRGRKKRVLTSKV 149


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1040

 Score = 23.9 bits (50), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 99  HNMTPDEYRIKWNLASDYPMVSREYATTR 127
           H +  ++Y + W LA+D+  ++ +Y T R
Sbjct: 170 HALKNEKYGMWWLLAADFLKIASKYWTER 198


>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 311

 Score = 23.1 bits (48), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 19  DIVAAYVSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQPERLKPAVPIRKS---IE 75
           DIV   V +H     +I  L+ ++     R++      D V+PERL     I      IE
Sbjct: 103 DIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIE 162

Query: 76  NGCLYCLEDGMQFKSLKRHLKTHHNMTPDEYRIKWNLASDYPMVSREYATTRSKL 130
              +     G     +  +L +   + P  Y    +  SD PM       TR KL
Sbjct: 163 KTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSA--DQISDLPMFHFTAEITREKL 215


>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 429

 Score = 22.3 bits (46), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 25 VSNHVVPMADIGSLITDVHSALQRVVSRAPCQDNVQPERLKPAVPIR 71
          +S+     +D  S+   VH  L++ +S A   D+  PE L  AV ++
Sbjct: 33 MSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDDPESLVYAVIMK 79


>gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 594

 Score = 21.2 bits (43), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 27  NHVVPMADIGSLITDVHSALQRVVSRAPCQD 57
           N+++     G +I D H+A +R++     QD
Sbjct: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.132    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,820
Number of Sequences: 1233
Number of extensions: 3211
Number of successful extensions: 9
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 149
length of database: 328,796
effective HSP length: 66
effective length of query: 83
effective length of database: 247,418
effective search space: 20535694
effective search space used: 20535694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 34 (17.7 bits)