HHsearch alignment for GI: 254780784 and conserved domain: COG0689
>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=3.9e-31 Score=271.89 Aligned_cols=221 Identities=29% Similarity=0.417 Sum_probs=194.8
Q ss_pred HHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEE-ECCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 87288665886775337879984475466700899987976899998-16865212233445442035877405887544
Q gi|254780784|r 307 MLDKKVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVT-LGTREDEQYVDSLSGTQRNDFMMHYNFLPCAT 385 (699)
Q Consensus 307 ILeeg~R~DGR~~dEIRpIs~EvgvLPrvHGSALFtRGETQaL~tvT-LG~~~d~Q~iD~l~~~~~k~fmlHYNFPpfsv 385 (699)
T Consensus 3 ~~~~~~R~dgR~~~elR~i~~~~~~~~~a~GS~~~~~G~tkVic~vsGp~e~~p~~l~~~~~g~~t~----ey~m~p~sT 78 (230)
T COG0689 3 ESEDGMRPDGRKPDELRPIKITRGVLKHAEGSSLIEFGNTKVICTVSGPREPVPRFLRGTGKGWLTA----EYGMLPRST 78 (230)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCEEEEEEEECCCCCCCHHHCCCCCEEEEE----EECCCCCCC
T ss_conf 7666737788884524646887155467885379996780899997067778885443777217999----970201234
Q ss_pred CCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 53345567650-24679999999874107864468738999853110278522356677779876259502254121332
Q gi|254780784|r 386 GEVSRMGAPSR-REIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAM 464 (699)
Q Consensus 386 GE~~~~~~~~R-REiGHg~la~ral~~~~P~~~~~p~tirv~~evl~sngsssma~vc~~slal~dagvp~~~~VaGiam 464 (699)
T Consensus 79 ~~-R~~~~~~~gR~~eisrli~~al~~~i~L~~~p~~~I~i~~dVlqaDggTrta~It~A~lAL~DAgipl~~~vaaiSv 157 (230)
T COG0689 79 DE-RKKREADRGRTKEISRLIGRALRAVIDLELLPESTIDIDCDVLQADGGTRTASITGASLALADAGIPLRDLVAAISV 157 (230)
T ss_pred CC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEHHHHHHHHHHHCCCCHHHHEEEEEE
T ss_conf 33-32344334303279999999998876565447638999999998789754202667999998739945653027678
Q ss_pred EEEEECCEEEEEEECCCCCCCCCCCCEEEEECCCC----CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 00440882899863144220136551001005565----1244324536556889999999999999999999998435
Q gi|254780784|r 465 GLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSG----ITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVL 539 (699)
Q Consensus 465 GLi~~~~~~~iLtDI~G~ED~~GdMDFKvaGT~~G----iTa~QmDiK~~gi~~~il~~al~~A~~gr~~il~~m~~~~ 539 (699)
T Consensus 158 gi~~~~----~~lDl~~~Eds~~~~d~~v~~~~~~~~~ei~~~~~~---~~~~~del~~lL~la~~g~~~~~~~~~~al 229 (230)
T COG0689 158 GIVDGV----IVLDLDYEEDSAAEADMNVVMTGNGGLVEIQGLAED---GPFTEDELLELLDLAIKGCNELRELQREAL 229 (230)
T ss_pred EEECCC----EEECCCCHHHCCCCCCCEEEEEECCCEEEEEEEECC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 887793----576374321112244714999706973789986306---997999999999999999999999999975