HHsearch alignment for GI: 254780784 and conserved domain: COG1096

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis].

Probab=96.74  E-value=0.009  Score=41.21  Aligned_cols=74  Identities=30%  Similarity=0.420  Sum_probs=63.7

Q ss_pred             HCCCCCCCCEEEEEEEEEEECCEEEECCC--C--------CCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCCC
Q ss_conf             52475468678999999941536998287--9--------7104886631444547855603259889999997868998
Q gi|254780784|r  613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCG--A--------RDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGK  682 (699)
Q Consensus       613 ~~~~~e~g~~y~~~v~~i~~fGafve~~~--g--------~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~~g~  682 (699)
T Consensus        58 ~~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~--~~  135 (188)
T COG1096          58 TPPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG--DP  135 (188)
T ss_pred             CCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECC--CC
T ss_conf             7776898879999995326608999999994333367887402589782023111020134464617999998617--87


Q ss_pred             EEEEEE
Q ss_conf             666873
Q gi|254780784|r  683 IKLSMK  688 (699)
Q Consensus       683 i~lSrk  688 (699)
T Consensus       136 ~~Lst~  141 (188)
T COG1096         136 IQLSTK  141 (188)
T ss_pred             EEEEEC
T ss_conf             189852