HHsearch alignment for GI: 254780784 and conserved domain: COG1098
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].
Probab=99.70 E-value=3.5e-17 Score=158.39 Aligned_cols=82 Identities=37% Similarity=0.613 Sum_probs=77.8
Q ss_pred CCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 75468678999999941536998287971048866314445478556032598899999978689986668730477878
Q gi|254780784|r 616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG 695 (699)
Q Consensus 616 ~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~~g~i~lSrk~~~~~~~ 695 (699)
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide~GKisLSIr~~~e~pe 81 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDENGKISLSIRKLEEEPE 81 (129)
T ss_pred CCCCCCEEEEEEEEEEECCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEHHHHHHCCC
T ss_conf 75346467888975674334898239973148835754436773998842788799999721468970335687664744
Q ss_pred CC
Q ss_conf 99
Q gi|254780784|r 696 KP 697 (699)
Q Consensus 696 ~~ 697 (699)
T Consensus 82 ~~ 83 (129)
T COG1098 82 KQ 83 (129)
T ss_pred CC
T ss_conf 33