HHsearch alignment for GI: 254780784 and conserved domain: COG1098

>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].
Probab=99.70  E-value=3.5e-17  Score=158.39  Aligned_cols=82  Identities=37%  Similarity=0.613  Sum_probs=77.8

Q ss_pred             CCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf             75468678999999941536998287971048866314445478556032598899999978689986668730477878
Q gi|254780784|r  616 VPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQNTG  695 (699)
Q Consensus       616 ~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~~g~i~lSrk~~~~~~~  695 (699)
T Consensus         2 ~~kvG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide~GKisLSIr~~~e~pe   81 (129)
T COG1098           2 SMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDENGKISLSIRKLEEEPE   81 (129)
T ss_pred             CCCCCCEEEEEEEEEEECCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEHHHHHHCCC
T ss_conf             75346467888975674334898239973148835754436773998842788799999721468970335687664744


Q ss_pred             CC
Q ss_conf             99
Q gi|254780784|r  696 KP  697 (699)
Q Consensus       696 ~~  697 (699)
T Consensus        82 ~~   83 (129)
T COG1098          82 KQ   83 (129)
T ss_pred             CC
T ss_conf             33