HHsearch alignment for GI: 254780784 and conserved domain: COG1185
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis].
Probab=99.64 E-value=3e-15 Score=142.71 Aligned_cols=310 Identities=20% Similarity=0.312 Sum_probs=204.0
Q ss_pred EEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCE--------EEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999914004546728999978948999997278888777735406--------8665232013367888735789887
Q gi|254780784|r 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLT--------VNYQERTYAVGKIPGGYLRRESRPT 85 (699)
Q Consensus 14 r~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~~~~~~dFfPLt--------VdY~Ek~yAaGkIPGgF~kREgrps 85 (699)
T Consensus 323 Rpi~~ev~~lpr-~HGS~LFtRGeTQal~v~TLG~~-~d~Qiid~l~~e~~krfm~hYNFPp~SvGE~-----g~~g~p~ 395 (692)
T COG1185 323 RPIGIEVGVLPR-THGSALFTRGETQALVVVTLGTP-RDAQVIDILEGEYKKRFLLHYNFPPFSVGET-----GRMGSPG 395 (692)
T ss_pred EEEEEEECCCCC-CCCHHHCCCCCCCCEEEEECCCC-CHHHHHHHCCCHHHHHEEEECCCCCCCCCCC-----CCCCCCC
T ss_conf 540377547887-53022100688751468975774-1366655205323332542126799874556-----7788987
Q ss_pred HHHHHHHHHHHCCCCCCCC--CCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC-CCC-E
Q ss_conf 1453111123212677674--68868837899998218888778999999999987326882354112355204-773-2
Q gi|254780784|r 86 ENEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI-NGQ-Y 161 (699)
Q Consensus 86 d~EiL~sRlIDR~lRPLFP--kgf~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIPf~GPVaaVRVG~i-dge-~ 161 (699)
T Consensus 396 RREiGHG~LA~Ral~~vlp~~e~fpytiRvVsEi~eSNGSsS--maSVCg~sLaLmdAGVPIk~pVAGIAMGLI~eg~~~ 473 (692)
T COG1185 396 RREIGHGALAERALAPVLPSEEEFPYTIRVVSEILESNGSSS--MASVCGGSLALMDAGVPIKAPVAGIAMGLIKEGDKY 473 (692)
T ss_pred CCCCCCCHHHHHHHHHHCCCHHCCCCEEEEEEHHHCCCCCCC--CHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCE
T ss_conf 533467364688886509951007804552201110467412--223455179887578963555543001523248744
Q ss_pred EECCCCC--C-CCCCCEEEEEECCCCHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4368500--0-222101355305443233312444--3248999988753168899999999999998388986447431
Q gi|254780784|r 162 VLNPRLD--E-DQGSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD 236 (699)
Q Consensus 162 ViNPt~e--e-~esdLDLvVAGT~d~IlMIE~~A~--EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~~~~Gk~K~~~~~~~ 236 (699)
T Consensus 474 ~vLsDI~G~EDhlGDMDFKVAGT~~GiTAlQMDiKi~Git~eim~~AL~QAk~aRlhIL~~M~~ai~~pr~els~~aPri 553 (692)
T COG1185 474 AVLSDILGDEDHLGDMDFKVAGTDDGITALQMDIKIKGITKEIMKKALEQAKGARLHILIVMNEAISEPRKELSPYAPRI 553 (692)
T ss_pred EEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 76400266533457732687257677501045566458889999999987999999999999998751143442458724
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC-HH-----CCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 25799999999898888874100012248999999999973022310-00-----0026788999999999999998728
Q gi|254780784|r 237 FSKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEH-SS-----WNEGEIVSVFEDIQAKVVRTVMLDK 310 (699)
Q Consensus 237 ~~~~~~~v~~~~~~~l~~a~~i~~K~eR~~ai~~l~~ei~e~l~ee~-~~-----~~~~~i~~af~~l~k~ivR~~ILee 310 (699)
T Consensus 554 ~t~------~i~~dKI~dvIG~gGk~-----I~~I~eetg~~IdieddGtv~i~~s~~~~~~~a-k~~I~~i~~e--~ev 619 (692)
T COG1185 554 ETI------KIDPDKIRDVIGPGGKT-----IKAITEETGVKIDIEDDGTVKIAASDGESAKKA-KERIEAITRE--VEV 619 (692)
T ss_pred EEE------CCCHHHHHHCCCCCCCC-----HHHHHHHHCCEEEECCCCCEEEEECCHHHHHHH-HHHHHHHHHH--HCC
T ss_conf 996------13888876321886320-----346557347679845898589995656888999-9999998743--101
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCE
Q ss_conf 8665886775337879984475466700899987976
Q gi|254780784|r 311 KVRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQ 347 (699)
Q Consensus 311 g~R~DGR~~dEIRpIs~EvgvLPrvHGSALFtRGETQ 347 (699)
T Consensus 620 g~iy~G~V~r-i~~fGaFv~l~~gkdgl~hiS~~~~~ 655 (692)
T COG1185 620 GEVYEGTVVR-IVDFGAFVELLPGKDGLVHISQLAKE 655 (692)
T ss_pred CCEEEEEEEE-EEECCEEEEECCCCCEEEEEHHHHHH
T ss_conf 5289988999-86412589833896206874353345