HHsearch alignment for GI: 254780784 and conserved domain: COG1855
>COG1855 ATPase (PilT family) [General function prediction only].
Probab=95.54 E-value=0.029 Score=37.10 Aligned_cols=140 Identities=20% Similarity=0.265 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHH
Q ss_conf 99999999999843566743322448757999977115000037860779989998688899808808999968989999
Q gi|254780784|r 525 KRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIE 604 (699)
Q Consensus 525 ~~gr~~il~~m~~~~~~~~~~~~~~ap~~~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~i~~~~~~~~~ 604 (699)
T Consensus 460 ~~a~~~i~~~i~r~~p~-~~eVe~~gd~~avv~vpe~~i~~vigk~g~~i~~ie~klgi~I~v~~~e~~~~-------~e 531 (604)
T COG1855 460 KLAEEEIEREIKRYLPG-DVEVEVVGDGRAVVKVPEKYIPKVIGKGGKRIKEIEKKLGIKIDVKPLEEEEE-------GE 531 (604)
T ss_pred HHHHHHHHHHHHHHCCC-CCEEEEECCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCC-------CC
T ss_conf 77999999999974799-82599961871799948788567761055318999987498068888665666-------77
Q ss_pred HHHHHHHHH--CCCCCCCCEEEEEEEEEEECCEEEE-CCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEE
Q ss_conf 999999985--2475468678999999941536998-28797104886631444547855603259889999
Q gi|254780784|r 605 AAREMIRSI--TDVPEVNKIYKGQVVKVMDFGAFVH-FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVK 673 (699)
Q Consensus 605 ~a~~~i~~~--~~~~e~g~~y~~~v~~i~~fGafve-~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk 673 (699)
T Consensus 532 ~~~~~i~~~~k~iv~~~~~~~~g~~v~i~~~~eylftatv~~~G~vri~~~~~-~g~~i~~ai~~g~~i~~~ 602 (604)
T COG1855 532 KVPVEIEEKGKHIVLYVGPDFAGKPVRIYAGDEYLFTATVSRKGVVKIRKDSE-VGKEIEEAIDNGRDIRAS 602 (604)
T ss_pred CCCEEEEECCCEEEEECCCCCCCCEEEEEECCEEEEEEECCCCCEEEEECCCH-HHHHHHHHHHCCCCEEEE
T ss_conf 47807860583799973788789816999788899999816783499851876-899999998648867996