HHsearch alignment for GI: 254780784 and conserved domain: COG2123
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis].
Probab=99.46 E-value=1.8e-11 Score=112.04 Aligned_cols=198 Identities=24% Similarity=0.317 Sum_probs=150.3
Q ss_pred EEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCC----CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCHHH
Q ss_conf 899999140045467289999789489999972788----88777735406866523201336788873578-9887145
Q gi|254780784|r 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS----LKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE-SRPTENE 88 (699)
Q Consensus 14 r~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~----~~~~~dFfPLtVdY~Ek~yAaGkIPGgF~kRE-grpsd~E 88 (699)
T Consensus 34 R~leI~~~vi~k-a~GSa~VklG~Tqvv~gvK~eig~Pf~DtP~eG~~--~~n~El-------~Plas~~fE~Gppde~a 103 (272)
T COG2123 34 RPLEIETGVIPK-ANGSALVKLGNTQVVVGVKAEIGEPFPDTPNEGVL--VVNVEL-------SPLASPSFEPGPPDELA 103 (272)
T ss_pred CCEEEEECCEEC-CCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCEE--EEEEEE-------ECCCCCCCCCCCCCHHH
T ss_conf 133889571424-78857998268089999972457888899877557--755466-------02324554689996017
Q ss_pred HHHHHHHHCCCCC----------CCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC--------------
Q ss_conf 3111123212677----------6746886883789999821888877899999999998732688--------------
Q gi|254780784|r 89 ILISRMIDRSIRP----------LFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLP-------------- 144 (699)
Q Consensus 89 iL~sRlIDR~lRP----------LFPkgf~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIP-------------- 144 (699)
T Consensus 104 ielsrvvdr~lr~s~aiDlekL~I~~g~kvwvv~vDv~vld~DGn--l~Daa~lA~~AAL~~t~vP~~~~~~~~~~v~~~ 181 (272)
T COG2123 104 IELSRVVDRGLRESKAIDLEKLCIEEGKKVWVVFVDVHVLDYDGN--LIDAASLAAVAALLNTRVPKAVEVGDGEIVIEV 181 (272)
T ss_pred HHHHHHHHHHHHHCCCCCHHHEEEECCCEEEEEEEEEEEECCCCC--HHHHHHHHHHHHHHHCCCCCEEECCCCCEEECC
T ss_conf 899999999887616756545157539889999998999868997--898999999999974679704532785056315
Q ss_pred --------CCCCEEEEEEEECCCCEEECCCCCCC-CCCCEEEEEECCCC--HHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --------23541123552047732436850002-22101355305443--23331244432489999887531688999
Q gi|254780784|r 145 --------FEGPVVGAQVDYINGQYVLNPRLDED-QGSLDLFVSGTQDA--VLMVELEANQLSEDVVLDAIIFGHNECKP 213 (699)
Q Consensus 145 --------f~GPVaaVRVG~idge~ViNPt~ee~-esdLDLvVAGT~d~--IlMIE~~A~EVsEe~mleAI~~Ahe~Ik~ 213 (699)
T Consensus 182 ~~~~~pl~~~~~pi~vt~a~ig~~lvvDPtleEe~v~d~~ltit~~~~~~Iv~iqK~g~~~~~~~~~~~~~~~A~~~~~k 261 (272)
T COG2123 182 EEEPVPLPVSNPPISVTFAKIGNVLVVDPSLEEELVADGRLTITVNEDGEIVAIQKVGGGSITESDLEKALKTALSKAEK 261 (272)
T ss_pred CCCCCCCCCCCCCEEEEEEEECCEEEECCCCCHHHHCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 67774455678756999999888898589803565237139999979985999997188767899999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780784|r 214 VIEAISKLAK 223 (699)
Q Consensus 214 iI~~Q~eL~~ 223 (699)
T Consensus 262 l~~~~~~~L~ 271 (272)
T COG2123 262 LREALKEALK 271 (272)
T ss_pred HHHHHHHHHC
T ss_conf 9999998633