HHsearch alignment for GI: 254780784 and conserved domain: COG5176

>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification].
Probab=96.50  E-value=0.016  Score=39.19  Aligned_cols=92  Identities=21%  Similarity=0.330  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHCCCC---CCCCCCCCCCEEEEEEECC------CCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEE---
Q ss_conf             999999999843566---7433224487579999771------1500003786077998999868889980880899---
Q gi|254780784|r  527 GRLHILNEMSKVLSE---SRLQLGEFTPRVEIMAIPP------DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK---  594 (699)
Q Consensus       527 gr~~il~~m~~~~~~---~~~~~~~~ap~~~~~~i~~------~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~---  594 (699)
T Consensus       121 er~~l~era~k~lp~fv~p~dy~rp-sk~q~KiYIPV~eyPe~NFVGLliGPRG~Tlk~le~~s~akIaIRG~gsvKegk  199 (269)
T COG5176         121 ERLWLKERAQKILPRFVLPNDYIRP-SKYQNKIYIPVQEYPESNFVGLLIGPRGSTLKQLERISRAKIAIRGSGSVKEGK  199 (269)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCEEEEEHHHCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCC
T ss_conf             7889999998753763487433575-312322786631076654347876587426999988757748996366534575


Q ss_pred             EEECCHHHHHHHHHHHHHHCC-CCCC
Q ss_conf             996898999999999998524-7546
Q gi|254780784|r  595 IASSSLAEIEAAREMIRSITD-VPEV  619 (699)
Q Consensus       595 i~~~~~~~~~~a~~~i~~~~~-~~e~  619 (699)
T Consensus       200 ~ssd~p~~~~N~e~~lhcLI~adsed  225 (269)
T COG5176         200 ISSDTPESLKNAEAVLHCLIEADSED  225 (269)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCHHH
T ss_conf             45668433310477677775230145