HHsearch alignment for GI: 254780784 and conserved domain: COG5176
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification].
Probab=96.50 E-value=0.016 Score=39.19 Aligned_cols=92 Identities=21% Similarity=0.330 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHCCCC---CCCCCCCCCCEEEEEEECC------CCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEE---
Q ss_conf 999999999843566---7433224487579999771------1500003786077998999868889980880899---
Q gi|254780784|r 527 GRLHILNEMSKVLSE---SRLQLGEFTPRVEIMAIPP------DQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVK--- 594 (699)
Q Consensus 527 gr~~il~~m~~~~~~---~~~~~~~~ap~~~~~~i~~------~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~--- 594 (699)
T Consensus 121 er~~l~era~k~lp~fv~p~dy~rp-sk~q~KiYIPV~eyPe~NFVGLliGPRG~Tlk~le~~s~akIaIRG~gsvKegk 199 (269)
T COG5176 121 ERLWLKERAQKILPRFVLPNDYIRP-SKYQNKIYIPVQEYPESNFVGLLIGPRGSTLKQLERISRAKIAIRGSGSVKEGK 199 (269)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCEEEEEHHHCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCC
T ss_conf 7889999998753763487433575-312322786631076654347876587426999988757748996366534575
Q ss_pred EEECCHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 996898999999999998524-7546
Q gi|254780784|r 595 IASSSLAEIEAAREMIRSITD-VPEV 619 (699)
Q Consensus 595 i~~~~~~~~~~a~~~i~~~~~-~~e~ 619 (699)
T Consensus 200 ~ssd~p~~~~N~e~~lhcLI~adsed 225 (269)
T COG5176 200 ISSDTPESLKNAEAVLHCLIEADSED 225 (269)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHH
T ss_conf 45668433310477677775230145