HHsearch alignment for GI: 254780784 and conserved domain: PRK00087
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed.
Probab=99.71 E-value=1.9e-16 Score=152.49 Aligned_cols=85 Identities=40% Similarity=0.637 Sum_probs=78.7
Q ss_pred HCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEEEECC
Q ss_conf 5247546867899999994153699828797104886631444547855603259889999997868-998666873047
Q gi|254780784|r 613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD 691 (699)
Q Consensus 613 ~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~-~g~i~lSrk~~~ 691 (699)
T Consensus 559 ~~~~~~~G~~v~g~V~~i~~fGaFVel~~gveGlih~sels~~~~~~~~~~~~~Gd~v~~kIl~id~~~krisLSiK~~~ 638 (670)
T PRK00087 559 VEEKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISEISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVE 638 (670)
T ss_pred HHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEECCCCCEEEEEHHHCC
T ss_conf 88648996999999999967707999579978998989948432489777489999899999998377788997846531
Q ss_pred CCCCCC
Q ss_conf 787899
Q gi|254780784|r 692 QNTGKP 697 (699)
Q Consensus 692 ~~~~~~ 697 (699)
T Consensus 639 ~~peke 644 (670)
T PRK00087 639 EEPEKE 644 (670)
T ss_pred CCCCHH
T ss_conf 180046