HHsearch alignment for GI: 254780784 and conserved domain: PRK00087

>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed.
Probab=99.71  E-value=1.9e-16  Score=152.49  Aligned_cols=85  Identities=40%  Similarity=0.637  Sum_probs=78.7

Q ss_pred             HCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEEEECC
Q ss_conf             5247546867899999994153699828797104886631444547855603259889999997868-998666873047
Q gi|254780784|r  613 ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVD  691 (699)
Q Consensus       613 ~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~-~g~i~lSrk~~~  691 (699)
T Consensus       559 ~~~~~~~G~~v~g~V~~i~~fGaFVel~~gveGlih~sels~~~~~~~~~~~~~Gd~v~~kIl~id~~~krisLSiK~~~  638 (670)
T PRK00087        559 VEEKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISEISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVE  638 (670)
T ss_pred             HHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEECCCCCEEEEEHHHCC
T ss_conf             88648996999999999967707999579978998989948432489777489999899999998377788997846531


Q ss_pred             CCCCCC
Q ss_conf             787899
Q gi|254780784|r  692 QNTGKP  697 (699)
Q Consensus       692 ~~~~~~  697 (699)
T Consensus       639 ~~peke  644 (670)
T PRK00087        639 EEPEKE  644 (670)
T ss_pred             CCCCHH
T ss_conf             180046