HHsearch alignment for GI: 254780784 and conserved domain: PRK00173
>PRK00173 rph ribonuclease PH; Reviewed.
Probab=99.97 E-value=4.9e-30 Score=263.00 Aligned_cols=203 Identities=23% Similarity=0.260 Sum_probs=171.6
Q ss_pred CEEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCC-C--CCCCCCCCCEEEEECCCCCCCCCCCCCCCCC---CCCCH
Q ss_conf 9899999140045467289999789489999972788-8--8777735406866523201336788873578---98871
Q gi|254780784|r 13 GRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRS-L--KDGQDFFPLTVNYQERTYAVGKIPGGYLRRE---SRPTE 86 (699)
Q Consensus 13 gr~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~-~--~~~~dFfPLtVdY~Ek~yAaGkIPGgF~kRE---grpsd 86 (699)
T Consensus 11 ~R~i~i~~g-~~~~A~GSa~v~~G~T~Vl~~v~~~~~~p~~~~~~~~g~l~~ey~mlP~st~~----R~~R~~~~g~~~~ 85 (237)
T PRK00173 11 LRPVTITRN-YTKHAEGSVLVEFGDTKVLCTASVEEGVPRFLKGQGQGWVTAEYGMLPRATHT----RNDREAAKGKQGG 85 (237)
T ss_pred CCCEEEEEC-CCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC----CCCCCCCCCCCCC
T ss_conf 446599948-77998736999968929999997266675300377653367775216767788----6757655688760
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEE--EEEEEECCCCCCHHHHHHHHHHHHHHHC-----------CCCCCCCEEEEE
Q ss_conf 453111123212677674688688378--9999821888877899999999998732-----------688235411235
Q gi|254780784|r 87 NEILISRMIDRSIRPLFSKCYKNETQV--IINVMQHDLESSPHVVSMVAASAALMLS-----------GLPFEGPVVGAQ 153 (699)
Q Consensus 87 ~EiL~sRlIDR~lRPLFPkgf~~evQI--v~~VLS~D~~~dpdvlAi~aASaAL~IS-----------dIPf~GPVaaVR 153 (699)
T Consensus 86 r~~Eisrli~ralr~~i~l~~~~~~~I~i~~~VL~aDGg~~--~Asi~aa~lAL~dA~~~~~~~~~~~~~P~~~~v~avs 163 (237)
T PRK00173 86 RTQEIQRLIGRSLRAVVDLKALGERTITLDCDVLQADGGTR--TASITGAYVALADALNKLVARGKLKKNPLKDHVAAVS 163 (237)
T ss_pred CHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEEECCCCCC--CEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 06899999999987761185549859999999861589821--2012357899999999998648666788546411168
Q ss_pred EEECCCCEEECCCCCCC-CCCCEEEEEECCCC-HHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52047732436850002-22101355305443-233312444--32489999887531688999999999999
Q gi|254780784|r 154 VDYINGQYVLNPRLDED-QGSLDLFVSGTQDA-VLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLA 222 (699)
Q Consensus 154 VG~idge~ViNPt~ee~-esdLDLvVAGT~d~-IlMIE~~A~--EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~ 222 (699)
T Consensus 164 ~G~i~~~~v~D~~~~Ed~~~d~d~~v~~~~~g~iv~iQ~~ge~~~fs~ee~~~~l~~A~~gi~~I~~~q~~aL 236 (237)
T PRK00173 164 VGIVDGEPVLDLDYVEDSAAETDMNVVMTGDGGFVEVQGTAEGAPFSREELNALLDLAEGGIAELVALQKAAL 236 (237)
T ss_pred EEEECCEEEECCCHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998786877888467626876369998699989999714677985999999999999999999999999974