HHsearch alignment for GI: 254780784 and conserved domain: PRK03983

>PRK03983 exosome complex exonuclease Rrp41; Provisional.
Probab=99.95  E-value=1.4e-26  Score=234.78  Aligned_cols=202  Identities=27%  Similarity=0.476  Sum_probs=172.9

Q ss_pred             EEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCC----CEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             899999140045467289999789489999972788887777354----0686652320133678887357898871453
Q gi|254780784|r   14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYLRRESRPTENEI   89 (699)
Q Consensus        14 r~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~~~~~~dFfP----LtVdY~Ek~yAaGkIPGgF~kREgrpsd~Ei   89 (699)
T Consensus        24 R~i~~~~g~~~-~adGSa~~~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~pfa~~~------r~~~~~~~~~~   96 (243)
T PRK03983         24 RPIKIEVGVLK-NADGSAYVEWGNNKIIAAVYGPREMHPRHLQLPDRAVLRVRYNMAPFSVDE------RKRPGPDRREI   96 (243)
T ss_pred             CCEEEEECCCC-CCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC------CCCCCCCHHHH
T ss_conf             38699969799-998899999789499999757844573200378748999999658876676------65789983189


Q ss_pred             HHHHHHHCCCCCCCC-CCC-CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEECCCC
Q ss_conf             111123212677674-688-688378999982188887789999999999873268823541123552047732436850
Q gi|254780784|r   90 LISRMIDRSIRPLFS-KCY-KNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL  167 (699)
Q Consensus        90 L~sRlIDR~lRPLFP-kgf-~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIPf~GPVaaVRVG~idge~ViNPt~  167 (699)
T Consensus        97 els~~i~~~l~~~i~~~~~p~s~I~V~v~Vl~~DG~~~--~aainaa~lAL~dAgIpm~d~v~a~svg~~~~~~ilDp~~  174 (243)
T PRK03983         97 EISKVIREALEPAIMLEQFPRSVIDVFIEVLQADAGTR--VAGITAASLALADAGIPMRDLVAGCAVGKVDGVIVLDLNK  174 (243)
T ss_pred             HHHHHHHHHHHHHCCHHHCCCEEEEEEEEEECCCCCCC--EECCCCCEEEHHHCCCCCCCCEEEEEEEEECCEEEECCCH
T ss_conf             99999999987542898879709999999991799810--0010353676545698724635179999989999988983


Q ss_pred             CCC-CCCCEEEEE--ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             002-221013553--0544323331244432489999887531688999999999999983
Q gi|254780784|r  168 DED-QGSLDLFVS--GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC  225 (699)
Q Consensus       168 ee~-esdLDLvVA--GT~d~IlMIE~~A~EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~~~~  225 (699)
T Consensus       175 ~Ee~~~~~~l~va~~~~~~~i~~~q~~G-~~s~~~l~~~l~~a~~~~~~i~~~~~~~l~~~  234 (243)
T PRK03983        175 EEDNYGEADMPVAIMPKLGEITLLQLDG-NLTRDEFLEALELAKKGAKRIYQIQREALKNK  234 (243)
T ss_pred             HHHCCCCCEEEEEEECCCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7740577406999966999899999988-58899999999999999999999999999878