HHsearch alignment for GI: 254780784 and conserved domain: PRK03983
>PRK03983 exosome complex exonuclease Rrp41; Provisional.
Probab=99.95 E-value=1.4e-26 Score=234.78 Aligned_cols=202 Identities=27% Similarity=0.476 Sum_probs=172.9
Q ss_pred EEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCC----CEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 899999140045467289999789489999972788887777354----0686652320133678887357898871453
Q gi|254780784|r 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFP----LTVNYQERTYAVGKIPGGYLRRESRPTENEI 89 (699)
Q Consensus 14 r~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~~~~~~dFfP----LtVdY~Ek~yAaGkIPGgF~kREgrpsd~Ei 89 (699)
T Consensus 24 R~i~~~~g~~~-~adGSa~~~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~pfa~~~------r~~~~~~~~~~ 96 (243)
T PRK03983 24 RPIKIEVGVLK-NADGSAYVEWGNNKIIAAVYGPREMHPRHLQLPDRAVLRVRYNMAPFSVDE------RKRPGPDRREI 96 (243)
T ss_pred CCEEEEECCCC-CCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC------CCCCCCCHHHH
T ss_conf 38699969799-998899999789499999757844573200378748999999658876676------65789983189
Q ss_pred HHHHHHHCCCCCCCC-CCC-CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEECCCC
Q ss_conf 111123212677674-688-688378999982188887789999999999873268823541123552047732436850
Q gi|254780784|r 90 LISRMIDRSIRPLFS-KCY-KNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQYVLNPRL 167 (699)
Q Consensus 90 L~sRlIDR~lRPLFP-kgf-~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIPf~GPVaaVRVG~idge~ViNPt~ 167 (699)
T Consensus 97 els~~i~~~l~~~i~~~~~p~s~I~V~v~Vl~~DG~~~--~aainaa~lAL~dAgIpm~d~v~a~svg~~~~~~ilDp~~ 174 (243)
T PRK03983 97 EISKVIREALEPAIMLEQFPRSVIDVFIEVLQADAGTR--VAGITAASLALADAGIPMRDLVAGCAVGKVDGVIVLDLNK 174 (243)
T ss_pred HHHHHHHHHHHHHCCHHHCCCEEEEEEEEEECCCCCCC--EECCCCCEEEHHHCCCCCCCCEEEEEEEEECCEEEECCCH
T ss_conf 99999999987542898879709999999991799810--0010353676545698724635179999989999988983
Q ss_pred CCC-CCCCEEEEE--ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 002-221013553--0544323331244432489999887531688999999999999983
Q gi|254780784|r 168 DED-QGSLDLFVS--GTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMC 225 (699)
Q Consensus 168 ee~-esdLDLvVA--GT~d~IlMIE~~A~EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~~~~ 225 (699)
T Consensus 175 ~Ee~~~~~~l~va~~~~~~~i~~~q~~G-~~s~~~l~~~l~~a~~~~~~i~~~~~~~l~~~ 234 (243)
T PRK03983 175 EEDNYGEADMPVAIMPKLGEITLLQLDG-NLTRDEFLEALELAKKGAKRIYQIQREALKNK 234 (243)
T ss_pred HHHCCCCCEEEEEEECCCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7740577406999966999899999988-58899999999999999999999999999878