HHsearch alignment for GI: 254780784 and conserved domain: PRK07400

>PRK07400 30S ribosomal protein S1; Reviewed.
Probab=99.02  E-value=2.3e-09  Score=94.84  Aligned_cols=95  Identities=22%  Similarity=0.339  Sum_probs=73.6

Q ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCC
Q ss_conf             88089999689899999999999852475468678999999941536998287971048866314445478556032598
Q gi|254780784|r  589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD  668 (699)
Q Consensus       589 d~g~v~i~~~~~~~~~~a~~~i~~~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd  668 (699)
T Consensus        92 ~~g~i~LS~k-~~~~~~~w~~l~~~---~~~~~~V~gkV~~~~kgG~~V~i-~gl~gFiP~Sqls~~~~~---~~~-vG~  162 (314)
T PRK07400         92 EDGQLTLSIR-RIEYMRAWERVRQL---QKEDATVRSEVFATNRGGALVRI-EGLRGFIPGSHISTRKPK---EEL-VGE  162 (314)
T ss_pred             CCCCEEEEEC-HHHHHHHHHHHHHH---HHCCCEEEEEEEEEECCCEEEEE-CCEEEEEEHHHCCCCCCC---HHH-CCC
T ss_conf             8896899860-43212069999977---32598799999999638489997-686568552451635563---210-697


Q ss_pred             EEEEEEEEECC-CCCEEEEEEECCC
Q ss_conf             89999997868-9986668730477
Q gi|254780784|r  669 TVWVKLLDFDD-RGKIKLSMKVVDQ  692 (699)
Q Consensus       669 ~i~vk~~~~d~-~g~i~lSrk~~~~  692 (699)
T Consensus       163 ~~~~kIieid~~~~rivlS~r~~l~  187 (314)
T PRK07400        163 ELPLKFLEVDEERNRLVLSHRRALV  187 (314)
T ss_pred             EEEEEEEEEECCCCCEEEEEEHHHH
T ss_conf             6889999971566824899833320