HHsearch alignment for GI: 254780784 and conserved domain: PRK07400
>PRK07400 30S ribosomal protein S1; Reviewed.
Probab=99.02 E-value=2.3e-09 Score=94.84 Aligned_cols=95 Identities=22% Similarity=0.339 Sum_probs=73.6
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCCCCHHHHCCCCC
Q ss_conf 88089999689899999999999852475468678999999941536998287971048866314445478556032598
Q gi|254780784|r 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKEGD 668 (699)
Q Consensus 589 d~g~v~i~~~~~~~~~~a~~~i~~~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd 668 (699)
T Consensus 92 ~~g~i~LS~k-~~~~~~~w~~l~~~---~~~~~~V~gkV~~~~kgG~~V~i-~gl~gFiP~Sqls~~~~~---~~~-vG~ 162 (314)
T PRK07400 92 EDGQLTLSIR-RIEYMRAWERVRQL---QKEDATVRSEVFATNRGGALVRI-EGLRGFIPGSHISTRKPK---EEL-VGE 162 (314)
T ss_pred CCCCEEEEEC-HHHHHHHHHHHHHH---HHCCCEEEEEEEEEECCCEEEEE-CCEEEEEEHHHCCCCCCC---HHH-CCC
T ss_conf 8896899860-43212069999977---32598799999999638489997-686568552451635563---210-697
Q ss_pred EEEEEEEEECC-CCCEEEEEEECCC
Q ss_conf 89999997868-9986668730477
Q gi|254780784|r 669 TVWVKLLDFDD-RGKIKLSMKVVDQ 692 (699)
Q Consensus 669 ~i~vk~~~~d~-~g~i~lSrk~~~~ 692 (699)
T Consensus 163 ~~~~kIieid~~~~rivlS~r~~l~ 187 (314)
T PRK07400 163 ELPLKFLEVDEERNRLVLSHRRALV 187 (314)
T ss_pred EEEEEEEEEECCCCCEEEEEEHHHH
T ss_conf 6889999971566824899833320