HHsearch alignment for GI: 254780784 and conserved domain: PRK08406

>PRK08406 transcription elongation factor NusA-like protein; Validated.
Probab=93.70  E-value=0.18  Score=30.72  Aligned_cols=95  Identities=16%  Similarity=0.239  Sum_probs=61.4

Q ss_pred             CCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf             35667433224487579999771150000378607799899986888998088089999689899999999999852475
Q gi|254780784|r  538 VLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP  617 (699)
Q Consensus       538 ~~~~~~~~~~~~ap~~~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~i~~~~~~~~~~a~~~i~~~~~~~  617 (699)
T Consensus        20 T~~~~~DCi~d~~~~riiFvV~~g~mG~AIGk~G~~Ik~l~~~lgkkIdiVe------~seD------p~~FI~N~l~Pa   87 (142)
T PRK08406         20 TGATVRDCIIDEEYDRIIFVVKEGDMGLAIGKGGENVKRLKEKLGKDIELVE------YSED------PEEFIKNLLAPA   87 (142)
T ss_pred             HCCCEEEEEECCCCCEEEEEECCCHHHHHHCCCCCHHHHHHHHHCCCEEEEE------CCCC------HHHHHHHCCCCC
T ss_conf             7997235687089988999987676889758796079999998589458996------4789------999998706932


Q ss_pred             CCCCEEEEEEEEEE-ECCEEEECCCCCCEEE
Q ss_conf             46867899999994-1536998287971048
Q gi|254780784|r  618 EVNKIYKGQVVKVM-DFGAFVHFCGARDGLV  647 (699)
Q Consensus       618 e~g~~y~~~v~~i~-~fGafve~~~g~~gl~  647 (699)
T Consensus        88 ~V~~V~---i~~~~~~~~a~V~V~~~~~~lA  115 (142)
T PRK08406         88 KVKSVK---ISEKNGKKVAYVTVAPEDKGIA  115 (142)
T ss_pred             EEEEEE---EECCCCCEEEEEEECHHHHHHH
T ss_conf             567999---9827996899999685652043