HHsearch alignment for GI: 254780784 and conserved domain: PRK09202
>PRK09202 nusA transcription elongation factor NusA; Validated.
Probab=96.38 E-value=0.035 Score=36.42 Aligned_cols=229 Identities=19% Similarity=0.252 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCC-CCEEEEEECCCEEEEEEEECCCCCCCCCC-CCC
Q ss_conf 7889999999999999987288665886775337879984475466-70089998797689999816865212233-445
Q gi|254780784|r 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYVD-SLS 367 (699)
Q Consensus 290 ~i~~af~~l~k~ivR~~ILeeg~R~DGR~~dEIRpIs~EvgvLPrv-HGSALFtRGETQaL~tvTLG~~~d~Q~iD-~l~ 367 (699)
T Consensus 110 ~AkQvi~QkireaEr~~i~~ef~~r~G----e-----iv~G~V~r~~~~~i~Vdlg~~ea~------Lp~~e~ip~E~~~ 174 (428)
T PRK09202 110 AAKQVIVQKIREAERERVYEEYKDRVG----E-----IITGTVKRVERGNIIVDLGRAEAI------LPRDEQIPRENFR 174 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC----C-----EEEEEEEEECCCCEEEEECCEEEE------CCHHHCCCCCCCC
T ss_conf 999999999999999999999987329----8-----899999997278389997882575------6478769986679
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 44203587740588754453345567650246799999998741078644687389998531102785223566777798
Q gi|254780784|r 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447 (699)
Q Consensus 368 ~~~~k~fmlHYNFPpfsvGE~~~~~~~~RREiGHg~la~ral~~~~P~~~~~p~tirv~~evl~sngsssma~vc~~sla 447 (699)
T Consensus 175 ~Gdrik~~i~------~V~~-~~kg~qi~lSRt~p~~v~~Lfe~EVPEI~dG--~IeIk~iaRep-G~RtKiAV~s~--- 241 (428)
T PRK09202 175 PGDRVRAYVY------EVRK-EARGPQIILSRTHPEFLKKLFEQEVPEIAEG--LIEIKAIARDP-GSRAKIAVKSN--- 241 (428)
T ss_pred CCCEEEEEEE------EHHC-CCCCCEEEEECCCHHHHHHHHHHHHHHHHCC--EEEEEEEECCC-CCCEEEEEECC---
T ss_conf 9987999872------0212-5898579995487899999998645685388--29999861367-87237999725---
Q ss_pred HHHCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEECCC-CCCCCCHHHHHHHHHHHHH
Q ss_conf 762595022541213320044088289986314422013655100100556512443245-3655688999999999999
Q gi|254780784|r 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM-KIGGISENIMVMALQQAKR 526 (699)
Q Consensus 448 l~dagvp~~~~VaGiamGLi~~~~~~~iLtDI~G~ED~~GdMDFKvaGT~~GiTa~QmDi-K~~gi~~~il~~al~~A~~ 526 (699)
T Consensus 242 --d---~~iDpVGA-cVG~r--GsRI~~I~~EL~gE--------------------kIDIi~~s~d~~~fi~nAlsPA~v 293 (428)
T PRK09202 242 --D---KRIDPVGA-CVGMR--GSRIQAISNELNGE--------------------KIDIILWSDDPAQFIINALSPAEV 293 (428)
T ss_pred --C---CCCCCCEE-EECCC--CCCHHHHHHHHCCC--------------------EEEEEECCCCHHHHHHHHCCCCCC
T ss_conf --9---99785137-77788--64299999874677--------------------689996788889999981794212
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEECC
Q ss_conf 9999999998435667433224487579999771150000378607799899986888998088
Q gi|254780784|r 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDD 590 (699)
Q Consensus 527 gr~~il~~m~~~~~~~~~~~~~~ap~~~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~ 590 (699)
T Consensus 294 ~~V-~id--------------e~-~~~~~VvV~d~qlSlAIGk~GqNvrLAs~Ltgw~IdI~s~ 341 (428)
T PRK09202 294 SSI-VVD--------------ED-KHSMDVVVPDDQLSLAIGKNGQNVRLASKLTGWKIDIMTE 341 (428)
T ss_pred EEE-EEC--------------CC-CCEEEEEECCCCHHHHHCCCCEEHHHHHHHHCCEEEEEEH
T ss_conf 189-972--------------77-8889999886522477577868599999977986999558