HHsearch alignment for GI: 254780784 and conserved domain: PRK09521
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional.
Probab=97.19 E-value=0.002 Score=46.55 Aligned_cols=73 Identities=34% Similarity=0.417 Sum_probs=64.1
Q ss_pred CCCCCCCEEEEEEEEEEECCEEEECCC-----------CCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCCCE
Q ss_conf 475468678999999941536998287-----------971048866314445478556032598899999978689986
Q gi|254780784|r 615 DVPEVNKIYKGQVVKVMDFGAFVHFCG-----------ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKI 683 (699)
Q Consensus 615 ~~~e~g~~y~~~v~~i~~fGafve~~~-----------g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~~g~i 683 (699)
T Consensus 60 ~~p~vGdiVig~V~~v~~~~a~v~I~~v~g~~~~~l~~~~~g~i~i~~v~~~~~~~~~d~fr~gDIVrAkVis~~~--~~ 137 (187)
T PRK09521 60 PLLKKGDIVYGRVVDVKEQRALVRIVSIEGRGNRELATSKLGGIHISQVSDGYVEDLTDAFKIGDIVRAKVISTTD--PI 137 (187)
T ss_pred CCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCC--CE
T ss_conf 7889899999999995476799999998686886256544888885437866745267524878689999973598--46
Q ss_pred EEEEEE
Q ss_conf 668730
Q gi|254780784|r 684 KLSMKV 689 (699)
Q Consensus 684 ~lSrk~ 689 (699)
T Consensus 138 ~Lst~~ 143 (187)
T PRK09521 138 QLSTKG 143 (187)
T ss_pred EEEECC
T ss_conf 999538