HHsearch alignment for GI: 254780784 and conserved domain: PRK11824
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional.
Probab=100.00 E-value=0 Score=2257.18 Aligned_cols=691 Identities=55% Similarity=0.904 Sum_probs=678.2
Q ss_pred CCEEEEEEEECCEEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 72089999989989999914004546728999978948999997278888777735406866523201336788873578
Q gi|254780784|r 2 FDVHTVEIEWAGRPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIPGGYLRRE 81 (699)
Q Consensus 2 ~~~~~~~~~~ggr~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~~~~~~dFfPLtVdY~Ek~yAaGkIPGgF~kRE 81 (699)
T Consensus 1 ~~~~~~~~~~~g~~l~~etGklAkqA~Gsv~v~~GdT~VL~Tv~~~~~~~~~~dFfPLtVdY~Ek~yAaGkIPGgF~KRE 80 (694)
T PRK11824 1 FNPIVKSIEFGGRTLTLETGKIARQADGAVLVRYGDTVVLVTVVASKEPKEGQDFFPLTVDYQEKTYAAGKIPGGFFKRE 80 (694)
T ss_pred CCCEEEEEEECCEEEEEECCHHHHHCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCCCCC
T ss_conf 98479999989999999844335416842999989969999998248888999967714757882101776777562678
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCE
Q ss_conf 98871453111123212677674688688378999982188887789999999999873268823541123552047732
Q gi|254780784|r 82 SRPTENEILISRMIDRSIRPLFSKCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYINGQY 161 (699)
Q Consensus 82 grpsd~EiL~sRlIDR~lRPLFPkgf~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIPf~GPVaaVRVG~idge~ 161 (699)
T Consensus 81 grpse~eiL~sRlIDRpiRPLFP~gf~~evQIi~tVLS~D~~~~pdvlAi~gASaAL~iSdIPF~GPVaaVRVG~idGe~ 160 (694)
T PRK11824 81 GRPSEKETLTSRLIDRPIRPLFPKGFRNEVQVVATVLSVDPENDPDILAMIGASAALSISGIPFNGPIAAVRVGYIDGEF 160 (694)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEE
T ss_conf 89971777878863676556777788866189999997688889068899999999985089978874899999889989
Q ss_pred EECCCCCCC-CCCCEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-HHH
Q ss_conf 436850002-221013553054432333124443248999988753168899999999999998388986447431-257
Q gi|254780784|r 162 VLNPRLDED-QGSLDLFVSGTQDAVLMVELEANQLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKD-FSK 239 (699)
Q Consensus 162 ViNPt~ee~-esdLDLvVAGT~d~IlMIE~~A~EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~~~~Gk~K~~~~~~~-~~~ 239 (699)
T Consensus 161 ViNPT~eqle~SdLDLvVAGT~daI~MVE~~A~EvsEe~mleAI~fahe~iq~ii~~q~el~~~~Gk~K~e~~~~~~~~e 240 (694)
T PRK11824 161 VLNPTVEELEESDLDLVVAGTKDAVLMVESEANELSEEVMLEAIEFGHEAIQELIDAQEELAAEAGKPKWEFEPPEVDEE 240 (694)
T ss_pred EECCCHHHHHHCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 98998567742837899982478189997247767889999999999999999999999999997899764778789989
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCH-HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999999998988888741000122489999999999730223100-0002678899999999999999872886658867
Q gi|254780784|r 240 LEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS-SWNEGEIVSVFEDIQAKVVRTVMLDKKVRMDGRD 318 (699)
Q Consensus 240 ~~~~v~~~~~~~l~~a~~i~~K~eR~~ai~~l~~ei~e~l~ee~~-~~~~~~i~~af~~l~k~ivR~~ILeeg~R~DGR~ 318 (699)
T Consensus 241 l~~~v~~~~~~~i~~a~~~~~K~eR~~al~~lk~ei~e~l~ee~~~~~~~~~i~~~f~~l~K~ivR~~IL~~~~RiDGR~ 320 (694)
T PRK11824 241 LKAAVKELAEAELKEAYQITDKQERYAALDAIKEEVLEALAEEEEEEEKEKEIKEALKDLEKKIVRRRILEEGIRIDGRD 320 (694)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999998344678899999999999999754226664579999999999999999999965896668888
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 75337879984475466700899987976899998168652122334454420358774058875445334556765024
Q gi|254780784|r 319 SETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQRNDFMMHYNFLPCATGEVSRMGAPSRRE 398 (699)
Q Consensus 319 ~dEIRpIs~EvgvLPrvHGSALFtRGETQaL~tvTLG~~~d~Q~iD~l~~~~~k~fmlHYNFPpfsvGE~~~~~~~~RRE 398 (699)
T Consensus 321 ~dEIRPI~~EvgvLPr~HGSaLFTRGETQaL~~~TLG~~~d~Q~iD~l~~~~~krFmlHYNFPPfSvGE~g~~~~p~RRE 400 (694)
T PRK11824 321 LDEIRPISIEVGVLPRTHGSALFTRGETQALVVATLGTLRDAQIIDGLEGEYKKRFMLHYNFPPYSVGETGRVGSPGRRE 400 (694)
T ss_pred CCCCCCCEEECCCCCCCCCCEEEECCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 66414525783887888743458715606999997258301010015676511047997478997678766778976310
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCEEEEEEE
Q ss_conf 67999999987410786446873899985311027852235667777987625950225412133200440882899863
Q gi|254780784|r 399 IGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSD 478 (699)
Q Consensus 399 iGHg~la~ral~~~~P~~~~~p~tirv~~evl~sngsssma~vc~~slal~dagvp~~~~VaGiamGLi~~~~~~~iLtD 478 (699)
T Consensus 401 IGHG~LAeRAL~~vlP~~e~FPYtIRvvSEileSNGSSSMAsVCg~sLALmdAGVPik~~VAGIAmGLi~e~~~~~iLtD 480 (694)
T PRK11824 401 IGHGALAERALEPVLPSEEEFPYTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGLIKEGDKYAVLSD 480 (694)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEE
T ss_conf 03369999988711898566983489998800448853448898787998857996466400477777870873799974
Q ss_pred CCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 14422013655100100556512443245365568899999999999999999999984356674332244875799997
Q gi|254780784|r 479 ISGDEDHLGHMDFKVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAI 558 (699)
Q Consensus 479 I~G~ED~~GdMDFKvaGT~~GiTa~QmDiK~~gi~~~il~~al~~A~~gr~~il~~m~~~~~~~~~~~~~~ap~~~~~~i 558 (699)
T Consensus 481 I~G~EDh~GDMDFKvAGT~~GITA~QmDiKi~Gi~~~il~~Al~qA~~gR~~IL~~M~~~i~~pr~~~s~~aP~i~~~~i 560 (694)
T PRK11824 481 ILGDEDHLGDMDFKVAGTRDGITALQMDIKIDGITREIMEEALEQAKEGRLHILGKMNEAISEPRTELSPYAPRIETIKI 560 (694)
T ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE
T ss_conf 04441024775315623666448887403447969899999999999999999999987366654333568987999997
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCEEEE
Q ss_conf 71150000378607799899986888998088089999689899999999999852475468678999999941536998
Q gi|254780784|r 559 PPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVKVMDFGAFVH 638 (699)
Q Consensus 559 ~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~i~~~~~~~~~~a~~~i~~~~~~~e~g~~y~~~v~~i~~fGafve 638 (699)
T Consensus 561 ~~~ki~~vIG~gGk~Ik~i~e~tg~~Idi~ddG~v~i~~~~~~~~~~A~~~I~~i~~~~evG~iy~g~V~~i~~fGafve 640 (694)
T PRK11824 561 DPDKIRDVIGPGGKTIREITEETGAKIDIEDDGTVKIAASDGEAAEAAKERIEGITAEPEVGEIYEGKVVRIVDFGAFVE 640 (694)
T ss_pred CHHHHHHEECCCHHHHHHHHHHHCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECEEEEE
T ss_conf 87986650686338899999988988999689179999899999999999999845768589779999999984418999
Q ss_pred CCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 287971048866314445478556032598899999978689986668730477
Q gi|254780784|r 639 FCGARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSMKVVDQ 692 (699)
Q Consensus 639 ~~~g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~~g~i~lSrk~~~~ 692 (699)
T Consensus 641 ~~pg~~GLlHiSel~~~rv~~v~d~~~~Gd~i~Vk~~~id~~Gri~Lsrk~~l~ 694 (694)
T PRK11824 641 ILPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDKRGRIRLSRKAVLE 694 (694)
T ss_pred ECCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEHHHHHC
T ss_conf 679980688800246523468645116898899999989899986666477519