HHsearch alignment for GI: 254780784 and conserved domain: PRK11824
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional.
Probab=99.87 E-value=1.6e-20 Score=185.70 Aligned_cols=301 Identities=19% Similarity=0.311 Sum_probs=220.8
Q ss_pred EEEEEEECEECCCCCCEEEEEECCCEEEEEEEECCCCCC-------CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 899999140045467289999789489999972788887-------7773540686652320133678887357898871
Q gi|254780784|r 14 RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKD-------GQDFFPLTVNYQERTYAVGKIPGGYLRRESRPTE 86 (699)
Q Consensus 14 r~i~~ETGklArqA~GsV~v~~G~T~VLaTv~~~~~~~~-------~~dFfPLtVdY~Ek~yAaGkIPGgF~kREgrpsd 86 (699)
T Consensus 325 RPI~~EvgvLPr-~HGSaLFTRGETQaL~~~TLG~~~d~Q~iD~l~~~~~krFmlHYNFPPfSvGE~-----g~~~~p~R 398 (694)
T PRK11824 325 RPISIEVGVLPR-THGSALFTRGETQALVVATLGTLRDAQIIDGLEGEYKKRFMLHYNFPPYSVGET-----GRVGSPGR 398 (694)
T ss_pred CCCEEECCCCCC-CCCCEEEECCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCC-----CCCCCCCC
T ss_conf 452578388788-874345871560699999725830101001567651104799747899767876-----67789763
Q ss_pred HHHHHHHHHHCCCCCCCC--CCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC--CCCEE
Q ss_conf 453111123212677674--68868837899998218888778999999999987326882354112355204--77324
Q gi|254780784|r 87 NEILISRMIDRSIRPLFS--KCYKNETQVIINVMQHDLESSPHVVSMVAASAALMLSGLPFEGPVVGAQVDYI--NGQYV 162 (699)
Q Consensus 87 ~EiL~sRlIDR~lRPLFP--kgf~~evQIv~~VLS~D~~~dpdvlAi~aASaAL~ISdIPf~GPVaaVRVG~i--dge~V 162 (699)
T Consensus 399 REIGHG~LAeRAL~~vlP~~e~FPYtIRvvSEileSNGSSS--MAsVCg~sLALmdAGVPik~~VAGIAmGLi~e~~~~~ 476 (694)
T PRK11824 399 REIGHGALAERALEPVLPSEEEFPYTIRVVSEILESNGSSS--MASVCGGSLALMDAGVPIKAPVAGIAMGLIKEGDKYA 476 (694)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCHH--HHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEE
T ss_conf 10033699999887118985669834899988004488534--4889878799885799646640047777787087379
Q ss_pred ECCCC---CCCCCCCEEEEEECCCCHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 36850---00222101355305443233312444--32489999887531688999999999999983889864474312
Q gi|254780784|r 163 LNPRL---DEDQGSLDLFVSGTQDAVLMVELEAN--QLSEDVVLDAIIFGHNECKPVIEAISKLAKMCAKEPIVIDSKDF 237 (699)
Q Consensus 163 iNPt~---ee~esdLDLvVAGT~d~IlMIE~~A~--EVsEe~mleAI~~Ahe~Ik~iI~~Q~eL~~~~Gk~K~~~~~~~~ 237 (699)
T Consensus 477 iLtDI~G~EDh~GDMDFKvAGT~~GITA~QmDiKi~Gi~~~il~~Al~qA~~gR~~IL~~M~~~i~~pr~~~s~~aP~i~ 556 (694)
T PRK11824 477 VLSDILGDEDHLGDMDFKVAGTRDGITALQMDIKIDGITREIMEEALEQAKEGRLHILGKMNEAISEPRTELSPYAPRIE 556 (694)
T ss_pred EEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 99740444102477531562366644888740344796989999999999999999999998736665433356898799
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCH------HCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 57999999998988888741000122489999999999730223100------000267889999999999999987288
Q gi|254780784|r 238 SKLEEEMSQMIKEDLRVSCFIPEKYVRCKQIDDLKKKMVSYFSSEHS------SWNEGEIVSVFEDIQAKVVRTVMLDKK 311 (699)
Q Consensus 238 ~~~~~~v~~~~~~~l~~a~~i~~K~eR~~ai~~l~~ei~e~l~ee~~------~~~~~~i~~af~~l~k~ivR~~ILeeg 311 (699)
T Consensus 557 ~~------~i~~~ki~~vIG~gG-----k~Ik~i~e~tg~~Idi~ddG~v~i~~~~~~~~~~A~~-~I~~i~~~--~evG 622 (694)
T PRK11824 557 TI------KIDPDKIRDVIGPGG-----KTIREITEETGAKIDIEDDGTVKIAASDGEAAEAAKE-RIEGITAE--PEVG 622 (694)
T ss_pred EE------EECHHHHHHEECCCH-----HHHHHHHHHHCCEEEEECCCEEEEEECCHHHHHHHHH-HHHHHCCC--CCCC
T ss_conf 99------978798665068633-----8899999988988999689179999899999999999-99984576--8589
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 66588677533787998447546670
Q gi|254780784|r 312 VRMDGRDSETVRDISAQVGLLQRTHG 337 (699)
Q Consensus 312 ~R~DGR~~dEIRpIs~EvgvLPrvHG 337 (699)
T Consensus 623 ~iy~g~-V~~i~~fGafve~~pg~~G 647 (694)
T PRK11824 623 EIYEGK-VVRIVDFGAFVEILPGKDG 647 (694)
T ss_pred CEEEEE-EEEEEECEEEEEECCCCEE
T ss_conf 779999-9999844189996799806