HHsearch alignment for GI: 254780784 and conserved domain: PRK12269
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional.
Probab=99.66 E-value=4.2e-16 Score=149.64 Aligned_cols=247 Identities=25% Similarity=0.351 Sum_probs=142.3
Q ss_pred EEEEEEEECCCCCCC---HHHHHHHHHHHHHHC---CCCCCCCCC---EEEEEEEEECC--EEEE----EEEC---CCCC
Q ss_conf 899985311027852---235667777987625---950225412---13320044088--2899----8631---4422
Q gi|254780784|r 422 TLRIVSEITESDGSS---SMATVCGSSLALMDA---GVPISKPVA---GIAMGLVKDGD--DFII----LSDI---SGDE 483 (699)
Q Consensus 422 tirv~~evl~sngss---sma~vc~~slal~da---gvp~~~~Va---GiamGLi~~~~--~~~i----LtDI---~G~E 483 (699)
T Consensus 363 ~v~V~ie~~e~~~~~LSr~kA~r~~~w~~le~a~~~~~~v~G~i~~~~~vkgG~~Vdl~~gv~AFLPgSqvd~rpv~d~~ 442 (863)
T PRK12269 363 GVRVYVERVTPYGPELSKTKADRLGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKVDAPE 442 (863)
T ss_pred EEEEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEECCCCCEEECCHHHCCCEECCCCH
T ss_conf 99999999708897561899987899999999975699079999744610453799858896786766564711368863
Q ss_pred CCCC-CCCEEEEECCCCCEEEECCCCC-----CC---CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
Q ss_conf 0136-5510010055651244324536-----55---6889999999999999999999998435667433224487579
Q gi|254780784|r 484 DHLG-HMDFKVAGTDSGITAMQMDMKI-----GG---ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE 554 (699)
Q Consensus 484 D~~G-dMDFKvaGT~~GiTa~QmDiK~-----~g---i~~~il~~al~~A~~gr~~il~~m~~~~~~~~~~~~~~ap~~~ 554 (699)
T Consensus 443 ~~~g~~~~f~i---------ik~~~~~~~r~~~NiVvSRravlEe~~~~~r~~~l~~l~eG~vv~G-~VKnit------- 505 (863)
T PRK12269 443 SLIGLTSKFYI---------ERISQSKQHRGNDNIVINRRRYLEERARQAREEFFNSVHIEDSVSG-VVKSFT------- 505 (863)
T ss_pred HHCCCCCCEEE---------EEEEHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEE-EEEECC-------
T ss_conf 21588741599---------9953133126778889976798888889999999864436877889-998315-------
Q ss_pred EEEECCCCEEEEECCCCHHHHHHHHHHCC----------EEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCC-------
Q ss_conf 99977115000037860779989998688----------8998088089999689899999999999852475-------
Q gi|254780784|r 555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGA----------KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP------- 617 (699)
Q Consensus 555 ~~~i~~~ki~~~iG~gG~~ik~i~~~~~~----------~i~i~d~g~v~i~~~~~~~~~~a~~~i~~~~~~~------- 617 (699)
T Consensus 506 -------dyGaFvDLGG--vDGLLHitDiSW~Rv~hPse~~~vG~~i~vkVlk~D~e~~-riSLglKQl~~dPW~~i~~k 575 (863)
T PRK12269 506 -------SFGAFIDLGG--FDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK-RINLSLKHFQPDPWLEFENK 575 (863)
T ss_pred -------CCEEEEECCC--CCEEEEEECCCCCCCCCHHHHHCCCCEEEEEEEEECCCCC-EEEECCCCCCCCCHHHHHHH
T ss_conf -------6405896177--1014662111357889989971279779999985256545-14311321778976788863
Q ss_pred -CCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCC-CCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEEEECCCCC
Q ss_conf -4686789999999415369982879710488663144-4547855603259889999997868-998666873047787
Q gi|254780784|r 618 -EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT 694 (699)
Q Consensus 618 -e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~-~~v~~~~d~~~~Gd~i~vk~~~~d~-~g~i~lSrk~~~~~~ 694 (699)
T Consensus 576 y~vg~~v~gkVtnitdyGaFVEle~GiEGLvHvSEmsWtkk~~~P~k~v~~GdeVev~VLeID~ekrRISLg~Kq~~~NP 655 (863)
T PRK12269 576 FGVNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANP 655 (863)
T ss_pred CCCCCEEEEEEEEEECCCEEEEECCCCEEEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCC
T ss_conf 88999899999997446569996389257887025020236799798076897799999988032267854410166884
Q ss_pred C
Q ss_conf 8
Q gi|254780784|r 695 G 695 (699)
Q Consensus 695 ~ 695 (699)
T Consensus 656 W 656 (863)
T PRK12269 656 W 656 (863)
T ss_pred H
T ss_conf 9