HHsearch alignment for GI: 254780784 and conserved domain: PRK12269

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional.
Probab=99.66  E-value=4.2e-16  Score=149.64  Aligned_cols=247  Identities=25%  Similarity=0.351  Sum_probs=142.3

Q ss_pred             EEEEEEEECCCCCCC---HHHHHHHHHHHHHHC---CCCCCCCCC---EEEEEEEEECC--EEEE----EEEC---CCCC
Q ss_conf             899985311027852---235667777987625---950225412---13320044088--2899----8631---4422
Q gi|254780784|r  422 TLRIVSEITESDGSS---SMATVCGSSLALMDA---GVPISKPVA---GIAMGLVKDGD--DFII----LSDI---SGDE  483 (699)
Q Consensus       422 tirv~~evl~sngss---sma~vc~~slal~da---gvp~~~~Va---GiamGLi~~~~--~~~i----LtDI---~G~E  483 (699)
T Consensus       363 ~v~V~ie~~e~~~~~LSr~kA~r~~~w~~le~a~~~~~~v~G~i~~~~~vkgG~~Vdl~~gv~AFLPgSqvd~rpv~d~~  442 (863)
T PRK12269        363 GVRVYVERVTPYGPELSKTKADRLGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKVDAPE  442 (863)
T ss_pred             EEEEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEECCCCCEEECCHHHCCCEECCCCH
T ss_conf             99999999708897561899987899999999975699079999744610453799858896786766564711368863


Q ss_pred             CCCC-CCCEEEEECCCCCEEEECCCCC-----CC---CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
Q ss_conf             0136-5510010055651244324536-----55---6889999999999999999999998435667433224487579
Q gi|254780784|r  484 DHLG-HMDFKVAGTDSGITAMQMDMKI-----GG---ISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVE  554 (699)
Q Consensus       484 D~~G-dMDFKvaGT~~GiTa~QmDiK~-----~g---i~~~il~~al~~A~~gr~~il~~m~~~~~~~~~~~~~~ap~~~  554 (699)
T Consensus       443 ~~~g~~~~f~i---------ik~~~~~~~r~~~NiVvSRravlEe~~~~~r~~~l~~l~eG~vv~G-~VKnit-------  505 (863)
T PRK12269        443 SLIGLTSKFYI---------ERISQSKQHRGNDNIVINRRRYLEERARQAREEFFNSVHIEDSVSG-VVKSFT-------  505 (863)
T ss_pred             HHCCCCCCEEE---------EEEEHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEE-EEEECC-------
T ss_conf             21588741599---------9953133126778889976798888889999999864436877889-998315-------


Q ss_pred             EEEECCCCEEEEECCCCHHHHHHHHHHCC----------EEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCC-------
Q ss_conf             99977115000037860779989998688----------8998088089999689899999999999852475-------
Q gi|254780784|r  555 IMAIPPDQIRNVIGMGGKVIRGIVEQTGA----------KVNIDDDGTVKIASSSLAEIEAAREMIRSITDVP-------  617 (699)
Q Consensus       555 ~~~i~~~ki~~~iG~gG~~ik~i~~~~~~----------~i~i~d~g~v~i~~~~~~~~~~a~~~i~~~~~~~-------  617 (699)
T Consensus       506 -------dyGaFvDLGG--vDGLLHitDiSW~Rv~hPse~~~vG~~i~vkVlk~D~e~~-riSLglKQl~~dPW~~i~~k  575 (863)
T PRK12269        506 -------SFGAFIDLGG--FDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK-RINLSLKHFQPDPWLEFENK  575 (863)
T ss_pred             -------CCEEEEECCC--CCEEEEEECCCCCCCCCHHHHHCCCCEEEEEEEEECCCCC-EEEECCCCCCCCCHHHHHHH
T ss_conf             -------6405896177--1014662111357889989971279779999985256545-14311321778976788863


Q ss_pred             -CCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCC-CCCCCHHHHCCCCCEEEEEEEEECC-CCCEEEEEEECCCCC
Q ss_conf             -4686789999999415369982879710488663144-4547855603259889999997868-998666873047787
Q gi|254780784|r  618 -EVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLLDFDD-RGKIKLSMKVVDQNT  694 (699)
Q Consensus       618 -e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~-~~v~~~~d~~~~Gd~i~vk~~~~d~-~g~i~lSrk~~~~~~  694 (699)
T Consensus       576 y~vg~~v~gkVtnitdyGaFVEle~GiEGLvHvSEmsWtkk~~~P~k~v~~GdeVev~VLeID~ekrRISLg~Kq~~~NP  655 (863)
T PRK12269        576 FGVNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANP  655 (863)
T ss_pred             CCCCCEEEEEEEEEECCCEEEEECCCCEEEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCC
T ss_conf             88999899999997446569996389257887025020236799798076897799999988032267854410166884


Q ss_pred             C
Q ss_conf             8
Q gi|254780784|r  695 G  695 (699)
Q Consensus       695 ~  695 (699)
T Consensus       656 W  656 (863)
T PRK12269        656 W  656 (863)
T ss_pred             H
T ss_conf             9