HHsearch alignment for GI: 254780784 and conserved domain: PRK12269
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional.
Probab=99.61 E-value=5.8e-15 Score=140.36 Aligned_cols=190 Identities=20% Similarity=0.357 Sum_probs=105.1
Q ss_pred EEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCEEEEECC-
Q ss_conf 01005565124432453655688999999999999999999999843566743322448-7579999771150000378-
Q gi|254780784|r 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFT-PRVEIMAIPPDQIRNVIGM- 569 (699)
Q Consensus 492 KvaGT~~GiTa~QmDiK~~gi~~~il~~al~~A~~gr~~il~~m~~~~~~~~~~~~~~a-p~~~~~~i~~~ki~~~iG~- 569 (699)
T Consensus 496 vv~G~VKnitdyGaFvDLGGv-------------DGLLHitDiSW~Rv~hPse~~~vG~~i~vkVlk~D~e~~riSLglK 562 (863)
T PRK12269 496 SVSGVVKSFTSFGAFIDLGGF-------------DGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEKRINLSLK 562 (863)
T ss_pred EEEEEEEECCCCEEEEECCCC-------------CEEEEEECCCCCCCCCHHHHHCCCCEEEEEEEEECCCCCEEEECCC
T ss_conf 788999831564058961771-------------0146621113578899899712797799999852565451431132
Q ss_pred ---------------CCHHHHHH---HHHHCCEEEEEC--CEEEEEEECCHHHHHH-HHHHH------------------
Q ss_conf ---------------60779989---998688899808--8089999689899999-99999------------------
Q gi|254780784|r 570 ---------------GGKVIRGI---VEQTGAKVNIDD--DGTVKIASSSLAEIEA-AREMI------------------ 610 (699)
Q Consensus 570 ---------------gG~~ik~i---~~~~~~~i~i~d--~g~v~i~~~~~~~~~~-a~~~i------------------ 610 (699)
T Consensus 563 Ql~~dPW~~i~~ky~vg~~v~gkVtnitdyGaFVEle~GiEGLvHvSEmsWtkk~~~P~k~v~~GdeVev~VLeID~ekr 642 (863)
T PRK12269 563 HFQPDPWLEFENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGYDIQAG 642 (863)
T ss_pred CCCCCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCCEEEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCC
T ss_conf 17789767888638899989999999744656999638925788702502023679979807689779999998803226
Q ss_pred --------------HHHCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCC-CCCCCHHHHCCCCCEEEEEEE
Q ss_conf --------------98524754686789999999415369982879710488663144-454785560325988999999
Q gi|254780784|r 611 --------------RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLST-ERVAKTSDVVKEGDTVWVKLL 675 (699)
Q Consensus 611 --------------~~~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~-~~v~~~~d~~~~Gd~i~vk~~ 675 (699)
T Consensus 643 RISLg~Kq~~~NPW~~~~~ky~vG~~v~g~I~nitdFGiFv~le~gIDGlvH~sDlSW~~~~~~~~~~~kkGd~ve~kVL 722 (863)
T PRK12269 643 RVSLGLKQVTANPWEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVI 722 (863)
T ss_pred EEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEECEEEEEECCCCCEEEEEHHHCCCCCCCCCHHHHCCCCCEEEEEEE
T ss_conf 78544101668849999976899898999999853308999747993678982106767877265662578987999999
Q ss_pred EECC-CCCEEEEEEECCCCC
Q ss_conf 7868-998666873047787
Q gi|254780784|r 676 DFDD-RGKIKLSMKVVDQNT 694 (699)
Q Consensus 676 ~~d~-~g~i~lSrk~~~~~~ 694 (699)
T Consensus 723 ~Id~ekeRIsLGiKQL~~DP 742 (863)
T PRK12269 723 ECDPQARRIRLGVKQLSDNP 742 (863)
T ss_pred EECCCCCEEEEECCCCCCCC
T ss_conf 97476577774010065787