HHsearch alignment for GI: 254780784 and conserved domain: PRK12327
>PRK12327 nusA transcription elongation factor NusA; Provisional.
Probab=96.78 E-value=0.026 Score=37.52 Aligned_cols=229 Identities=19% Similarity=0.236 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCC-CCEEEEEECCCEEEEEEEECCCCCCCCCC-CCC
Q ss_conf 7889999999999999987288665886775337879984475466-70089998797689999816865212233-445
Q gi|254780784|r 290 EIVSVFEDIQAKVVRTVMLDKKVRMDGRDSETVRDISAQVGLLQRT-HGSSLFIRGDTQAIVVVTLGTREDEQYVD-SLS 367 (699)
Q Consensus 290 ~i~~af~~l~k~ivR~~ILeeg~R~DGR~~dEIRpIs~EvgvLPrv-HGSALFtRGETQaL~tvTLG~~~d~Q~iD-~l~ 367 (699)
T Consensus 109 ~AKQvi~QkireaEr~~i~~ey~~r~G----ei--V~---G~V~r~~~~~~~Vdlg~~ea~------LP~~eqip~E~~~ 173 (353)
T PRK12327 109 TAKQVIMQRLREAEREVIYNEFKEREG----DI--VT---GTVQRDDNRFVYVNLGKIEAV------LPPAEQIPGETYK 173 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC----CE--EE---EEEEEECCCCEEEEECCEEEE------CCHHHCCCCCCCC
T ss_conf 999999999999999999999987439----66--99---999997588589997882464------6879869987779
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 44203587740588754453345567650246799999998741078644687389998531102785223566777798
Q gi|254780784|r 368 GTQRNDFMMHYNFLPCATGEVSRMGAPSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITESDGSSSMATVCGSSLA 447 (699)
Q Consensus 368 ~~~~k~fmlHYNFPpfsvGE~~~~~~~~RREiGHg~la~ral~~~~P~~~~~p~tirv~~evl~sngsssma~vc~~sla 447 (699)
T Consensus 174 ~Gdrika~i~------~V~~-~~kgp~I~lSRt~p~~v~~Lfe~EVPEI~dG--~VeIk~iaRep-G~RtKvAV~s~--- 240 (353)
T PRK12327 174 HGDRIKVYVV------KVEK-TTKGPQIFVSRTHPGLVKRLFELEVPEIYDG--TVEIVSIAREA-GDRTKIAVRSN--- 240 (353)
T ss_pred CCCEEEEEEE------EEEE-CCCCCEEEEECCCHHHHHHHHHHHCHHHHCC--EEEEEEEECCC-CCCEEEEEEEC---
T ss_conf 9997999999------9997-5997479996498899999998636686388--29999960167-87148999925---
Q ss_pred HHHCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEECCC-CCCCCCHHHHHHHHHHHHH
Q ss_conf 762595022541213320044088289986314422013655100100556512443245-3655688999999999999
Q gi|254780784|r 448 LMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMDM-KIGGISENIMVMALQQAKR 526 (699)
Q Consensus 448 l~dagvp~~~~VaGiamGLi~~~~~~~iLtDI~G~ED~~GdMDFKvaGT~~GiTa~QmDi-K~~gi~~~il~~al~~A~~ 526 (699)
T Consensus 241 --d~~---iDpv-GAcVG~~--G~RI~~I~~EL~gE--------------------kIDii~~s~d~~~fi~nALsPA~v 292 (353)
T PRK12327 241 --NPN---VDAI-GACVGPK--GQRVQNIVNELKGE--------------------KIDIIDWSEDPAEFIANALSPAKV 292 (353)
T ss_pred --CCC---CCCC-EEEECCC--CCHHHHHHHHHCCC--------------------EEEEEECCCCHHHHHHHHCCCCCE
T ss_conf --999---8840-5888799--72599999874777--------------------788996789889999973797610
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEEC
Q ss_conf 999999999843566743322448757999977115000037860779989998688899808
Q gi|254780784|r 527 GRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD 589 (699)
Q Consensus 527 gr~~il~~m~~~~~~~~~~~~~~ap~~~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d 589 (699)
T Consensus 293 ~~V~i---------------~de~~k~~~ViV~~~qlslAIGk~GqNvrLAs~Ltgw~IdI~s 340 (353)
T PRK12327 293 VSVEV---------------DDEEEKAARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKS 340 (353)
T ss_pred EEEEE---------------ECCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEEEE
T ss_conf 38999---------------7587866999988104157627997749999997799799856