HHsearch alignment for GI: 254780784 and conserved domain: PRK12329
>PRK12329 nusA transcription elongation factor NusA; Provisional.
Probab=94.89 E-value=0.23 Score=29.72 Aligned_cols=179 Identities=22% Similarity=0.288 Sum_probs=95.2
Q ss_pred CCCCCCCCC-CCCCCEEEEEEEECCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCC
Q ss_conf 652122334-454420358774058875445334556---7650246799999998741078644687389998531102
Q gi|254780784|r 357 REDEQYVDS-LSGTQRNDFMMHYNFLPCATGEVSRMG---APSRREIGHGRLARRAIHPVLPQTAQFPYTLRIVSEITES 432 (699)
Q Consensus 357 ~~d~Q~iD~-l~~~~~k~fmlHYNFPpfsvGE~~~~~---~~~RREiGHg~la~ral~~~~P~~~~~p~tirv~~evl~s 432 (699)
T Consensus 187 P~~EqIP~E~yr~Gdrira~i~------~V~~~~~kGpqIiLSR---t~p~fv~kLFe~EVPEI~dG--~VeIk~iARep 255 (457)
T PRK12329 187 PKREQLPNDNYRANATFKVFLK------EVSEGPRRGPQLFVSR---ANAGLVVYLFENEVPEIEEG--VVRIVAVAREA 255 (457)
T ss_pred CHHHCCCCCCCCCCCEEEEEEE------EEECCCCCCCEEEEEC---CCHHHHHHHHHHHCHHHHCC--CEEEEEEEECC
T ss_conf 7888699987899998999999------9764678885699954---87799999998645586389--48999998448
Q ss_pred C------CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEECC
Q ss_conf 7------8522356677779876259502254121332004408828998631442201365510010055651244324
Q gi|254780784|r 433 D------GSSSMATVCGSSLALMDAGVPISKPVAGIAMGLVKDGDDFIILSDISGDEDHLGHMDFKVAGTDSGITAMQMD 506 (699)
Q Consensus 433 n------gsssma~vc~~slal~dagvp~~~~VaGiamGLi~~~~~~~iLtDI~G~ED~~GdMDFKvaGT~~GiTa~QmD 506 (699)
T Consensus 256 ~~~~r~~G~RtKIAV~--------S~d~~iDPVGa-CVG~r--G~R------Iq~I~~EL~-------gE--kIDii~w- 308 (457)
T PRK12329 256 NPPSRAVGPRTKIAVD--------TLERDVDPVGA-CIGAR--GSR------IQQVVNELR-------GE--KIDVIRW- 308 (457)
T ss_pred CCCCCCCCCCEEEEEE--------ECCCCCCCEEE-EECCC--CCC------HHHHHHHHC-------CC--EEEEEEC-
T ss_conf 8777788650389998--------06999773147-88899--742------999998857-------96--3899975-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCEEE
Q ss_conf 53655688999999999999999999999843566743322448757999977115000037860779989998688899
Q gi|254780784|r 507 MKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGEFTPRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVN 586 (699)
Q Consensus 507 iK~~gi~~~il~~al~~A~~gr~~il~~m~~~~~~~~~~~~~~ap~~~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~ 586 (699)
T Consensus 309 ---s~d~~~~i~nALsPA~v~~v~---------------~~d~~~~~~~V~V~~dqLslAIGk~GqNvrLAa~Ltgw~Id 370 (457)
T PRK12329 309 ---SPDPATYIANSLSPARVDEVR---------------LVDPEGQHAHVLVPPDQLSLAIGKEGQNVRLAARLTGWKID 370 (457)
T ss_pred ---CCCHHHHHHHHCCCCCCCEEE---------------EECCCCCEEEEEECCCCCHHHHCCCCCHHHHHHHHHCCEEE
T ss_conf ---787899999843965351799---------------98588887999988541037627987579999997798788
Q ss_pred EECCE
Q ss_conf 80880
Q gi|254780784|r 587 IDDDG 591 (699)
Q Consensus 587 i~d~g 591 (699)
T Consensus 371 Iks~~ 375 (457)
T PRK12329 371 IKDSA 375 (457)
T ss_pred ECCHH
T ss_conf 56689