HHsearch alignment for GI: 254780784 and conserved domain: PTZ00162
>PTZ00162 RNA polymerase II subunit 7; Provisional.
Probab=97.68 E-value=9.3e-05 Score=57.37 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=55.9
Q ss_pred HHHCCCCCCCCEEEEEEEEEEECCEEEECCCCCCEEEEEEECCCCCC----------CCHHHHCCCCCEEEEEEEEECC
Q ss_conf 98524754686789999999415369982879710488663144454----------7855603259889999997868
Q gi|254780784|r 611 RSITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLSTERV----------AKTSDVVKEGDTVWVKLLDFDD 679 (699)
Q Consensus 611 ~~~~~~~e~g~~y~~~v~~i~~fGafve~~~g~~gl~HiS~l~~~~v----------~~~~d~~~~Gd~i~vk~~~~d~ 679 (699)
T Consensus 73 ~aivfkP~~~EVvdg~V~~v~~~G~fv~~GPl-~~fv~~s~i~~d~~yd~~~~~~~~~~~~~~i~kgd~VR~rIvg~~~ 150 (170)
T PTZ00162 73 QAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPL-KIFVSRTAIPPNFVYDSDSAYPCFSDGTISIKPQSEVRLRLQGIRY 150 (170)
T ss_pred EEEEEECCCCCEEEEEEEEEECCEEEEEECCE-EEEEEHHHCCCCCEECCCCCCCEECCCCCEECCCCEEEEEEEEEEE
T ss_conf 99999336798999999999640799991280-8998989999864897899860482788388889999999999873