HHsearch alignment for GI: 254780784 and conserved domain: cd02393
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=99.54 E-value=1.6e-14 Score=136.80 Aligned_cols=61 Identities=57% Similarity=0.952 Sum_probs=59.9
Q ss_pred CEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 7579999771150000378607799899986888998088089999689899999999999
Q gi|254780784|r 551 PRVEIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDDDGTVKIASSSLAEIEAAREMIR 611 (699)
Q Consensus 551 p~~~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d~g~v~i~~~~~~~~~~a~~~i~ 611 (699)
T Consensus 1 P~i~~~~I~~dkIg~vIGpGGk~Ik~I~e~tg~~I~I~d~G~V~I~~~~~~~~~~A~~~Ie 61 (61)
T cd02393 1 PRIETMKIPPDKIRDVIGPGGKTIKKIIEETGVKIDIEDDGTVYIAASDKEAAEKAKKMIE 61 (61)
T ss_pred CEEEEEEECHHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 9489999698998764488608999999988988998389589999899999999999749