>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stran

Probab=97.84  E-value=9.7e-05  Score=57.24  Aligned_cols=56  Identities=30%  Similarity=0.531  Sum_probs=49.0

Q ss_pred             EEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEEEC-------CEEEEEEECCHHHHHHHHHHH
Q ss_conf             999977115000037860779989998688899808-------808999968989999999999
Q gi|254780784|r  554 EIMAIPPDQIRNVIGMGGKVIRGIVEQTGAKVNIDD-------DGTVKIASSSLAEIEAAREMI  610 (699)
Q Consensus       554 ~~~~i~~~ki~~~iG~gG~~ik~i~~~~~~~i~i~d-------~g~v~i~~~~~~~~~~a~~~i  610 (699)
T Consensus         2 ~rilvP~~~vG~vIGk~G~~I~~i~~~sga~I~i~~~~~~~~~eR~v~I~G~-~~~v~~A~~~I   64 (65)
T cd02396           2 LRLLVPSSQAGSIIGKGGSTIKEIREETGAKIRVSKSVLPGSTERVVTISGK-PSAVQKALLLI   64 (65)
T ss_pred             EEEEEEHHHEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEEEC-HHHHHHHHHHH
T ss_conf             8999874672289979987899999984988999988999999469999978-99999999853