HHsearch alignment for GI: 254780784 and conserved domain: cd05686
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.77 E-value=1.8e-18 Score=168.95 Aligned_cols=71 Identities=44% Similarity=0.802 Sum_probs=67.9
Q ss_pred CCCCCEEEEEEEEEEECCEEEECCC-CCCEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf 5468678999999941536998287-9710488663144454785560325988999999786899866687
Q gi|254780784|r 617 PEVNKIYKGQVVKVMDFGAFVHFCG-ARDGLVHISQLSTERVAKTSDVVKEGDTVWVKLLDFDDRGKIKLSM 687 (699)
Q Consensus 617 ~e~g~~y~~~v~~i~~fGafve~~~-g~~gl~HiS~l~~~~v~~~~d~~~~Gd~i~vk~~~~d~~g~i~lSr 687 (699)
T Consensus 1 Pevg~i~~G~V~~i~~fGAFV~i~g~~~~GLvHiSeis~~rv~~~~dvv~vGd~V~Vkvi~id~~~ki~LSl 72 (73)
T cd05686 1 PALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKDKMKLSL 72 (73)
T ss_pred CCCCCEEEEEEEEEEECCEEEEECCCCCCEEEEEECCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEC
T ss_conf 978869999998997532399908988435599560541202899995579999999999886899889841